Hb_032202_240

Information

Type -
Description -
Location Contig32202: 126381-130697
Sequence    

Annotation

kegg
ID rcu:RCOM_1613780
description hypothetical protein
nr
ID XP_012083480.1
description PREDICTED: F-box protein At4g00755 [Jatropha curcas]
swissprot
ID Q8LG03
description F-box protein At4g00755 OS=Arabidopsis thaliana GN=At4g00755 PE=2 SV=1
trembl
ID A0A067K0W8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14459 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34099: 126495-130620 , PASA_asmbl_34100: 126370-130175 , PASA_asmbl_34101: 130217-130534
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032202_240 0.0 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
2 Hb_002977_010 0.0641241096 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
3 Hb_001946_300 0.0720298816 - - PREDICTED: F-box protein At-B [Jatropha curcas]
4 Hb_001616_050 0.078654247 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
5 Hb_000331_160 0.083013046 - - adenylate kinase 1 chloroplast, putative [Ricinus communis]
6 Hb_017075_030 0.084238596 - - helicase, putative [Ricinus communis]
7 Hb_025477_060 0.0889584393 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
8 Hb_000953_030 0.0899943553 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
9 Hb_003878_140 0.0903494743 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
10 Hb_000813_100 0.0907794049 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
11 Hb_148209_020 0.0911342906 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
12 Hb_002659_060 0.0927471378 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
13 Hb_002477_150 0.0944416848 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
14 Hb_000343_210 0.0950323412 - - ran-binding protein, putative [Ricinus communis]
15 Hb_011465_030 0.09561891 - - PREDICTED: B2 protein [Jatropha curcas]
16 Hb_000504_160 0.0965750339 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
17 Hb_000685_080 0.0976355736 - - protein binding protein, putative [Ricinus communis]
18 Hb_002235_320 0.0981789977 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
19 Hb_000594_020 0.0984393902 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
20 Hb_031091_010 0.0985148786 - - crooked neck protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_032202_240 Hb_032202_240 Hb_002977_010 Hb_002977_010 Hb_032202_240--Hb_002977_010 Hb_001946_300 Hb_001946_300 Hb_032202_240--Hb_001946_300 Hb_001616_050 Hb_001616_050 Hb_032202_240--Hb_001616_050 Hb_000331_160 Hb_000331_160 Hb_032202_240--Hb_000331_160 Hb_017075_030 Hb_017075_030 Hb_032202_240--Hb_017075_030 Hb_025477_060 Hb_025477_060 Hb_032202_240--Hb_025477_060 Hb_003878_140 Hb_003878_140 Hb_002977_010--Hb_003878_140 Hb_006316_070 Hb_006316_070 Hb_002977_010--Hb_006316_070 Hb_002977_010--Hb_001616_050 Hb_002849_080 Hb_002849_080 Hb_002977_010--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_002977_010--Hb_148209_020 Hb_000363_130 Hb_000363_130 Hb_001946_300--Hb_000363_130 Hb_000313_340 Hb_000313_340 Hb_001946_300--Hb_000313_340 Hb_140049_020 Hb_140049_020 Hb_001946_300--Hb_140049_020 Hb_147737_010 Hb_147737_010 Hb_001946_300--Hb_147737_010 Hb_000504_160 Hb_000504_160 Hb_001946_300--Hb_000504_160 Hb_001616_050--Hb_003878_140 Hb_007229_040 Hb_007229_040 Hb_001616_050--Hb_007229_040 Hb_000224_060 Hb_000224_060 Hb_001616_050--Hb_000224_060 Hb_001616_050--Hb_001946_300 Hb_000640_020 Hb_000640_020 Hb_000331_160--Hb_000640_020 Hb_002326_020 Hb_002326_020 Hb_000331_160--Hb_002326_020 Hb_023020_060 Hb_023020_060 Hb_000331_160--Hb_023020_060 Hb_001492_010 Hb_001492_010 Hb_000331_160--Hb_001492_010 Hb_000331_160--Hb_000504_160 Hb_033883_060 Hb_033883_060 Hb_017075_030--Hb_033883_060 Hb_000406_240 Hb_000406_240 Hb_017075_030--Hb_000406_240 Hb_003106_150 Hb_003106_150 Hb_017075_030--Hb_003106_150 Hb_031042_070 Hb_031042_070 Hb_017075_030--Hb_031042_070 Hb_017075_030--Hb_001946_300 Hb_017075_030--Hb_003878_140 Hb_000002_440 Hb_000002_440 Hb_025477_060--Hb_000002_440 Hb_025477_060--Hb_147737_010 Hb_000096_180 Hb_000096_180 Hb_025477_060--Hb_000096_180 Hb_000046_450 Hb_000046_450 Hb_025477_060--Hb_000046_450 Hb_046615_020 Hb_046615_020 Hb_025477_060--Hb_046615_020 Hb_001975_020 Hb_001975_020 Hb_025477_060--Hb_001975_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
217.388 211.893 62.7157 66.2355 240.216 225.13
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
132.315 52.5326 76.6686 63.9381 32.6853

CAGE analysis