Hb_032208_020

Information

Type -
Description -
Location Contig32208: 1936-4858
Sequence    

Annotation

kegg
ID rcu:RCOM_1360330
description calmodulin binding protein, putative
nr
ID KDP42106.1
description hypothetical protein JCGZ_01894 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L0W1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01894 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34105: 2533-2770
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032208_020 0.0 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
2 Hb_003750_070 0.2060578309 - - PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]
3 Hb_001300_210 0.2176460225 transcription factor TF Family: ARF PREDICTED: auxin response factor 23-like [Jatropha curcas]
4 Hb_002681_030 0.2241334823 - - PREDICTED: fatty-acid-binding protein 1-like [Jatropha curcas]
5 Hb_004228_080 0.2307293474 - - phosphoethanolamine n-methyltransferase, putative [Ricinus communis]
6 Hb_004545_020 0.2378025181 - - PREDICTED: transmembrane protein adipocyte-associated 1-like [Populus euphratica]
7 Hb_001252_240 0.2445370747 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
8 Hb_023765_020 0.248562137 - - PREDICTED: putative SNAP25 homologous protein SNAP30 [Populus euphratica]
9 Hb_005725_200 0.2507235081 transcription factor TF Family: GRF hypothetical protein JCGZ_15989 [Jatropha curcas]
10 Hb_032717_020 0.2520636351 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2 isoform X1 [Jatropha curcas]
11 Hb_001776_220 0.254883759 - - -
12 Hb_001377_030 0.2549133694 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
13 Hb_005375_050 0.2550572644 - - inorganic pyrophosphatase, putative [Ricinus communis]
14 Hb_000260_800 0.2591614184 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Populus euphratica]
15 Hb_000975_220 0.2592634551 - - Histone H2B [Medicago truncatula]
16 Hb_003927_120 0.2630756767 - - PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
17 Hb_001195_180 0.2707085167 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 5 [Jatropha curcas]
18 Hb_001454_070 0.2708669752 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
19 Hb_020805_080 0.2717114211 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
20 Hb_000025_230 0.271914201 - - PREDICTED: 10 kDa chaperonin [Vitis vinifera]

Gene co-expression network

sample Hb_032208_020 Hb_032208_020 Hb_003750_070 Hb_003750_070 Hb_032208_020--Hb_003750_070 Hb_001300_210 Hb_001300_210 Hb_032208_020--Hb_001300_210 Hb_002681_030 Hb_002681_030 Hb_032208_020--Hb_002681_030 Hb_004228_080 Hb_004228_080 Hb_032208_020--Hb_004228_080 Hb_004545_020 Hb_004545_020 Hb_032208_020--Hb_004545_020 Hb_001252_240 Hb_001252_240 Hb_032208_020--Hb_001252_240 Hb_003750_070--Hb_004545_020 Hb_003750_070--Hb_004228_080 Hb_000959_310 Hb_000959_310 Hb_003750_070--Hb_000959_310 Hb_003050_110 Hb_003050_110 Hb_003750_070--Hb_003050_110 Hb_000092_130 Hb_000092_130 Hb_003750_070--Hb_000092_130 Hb_001300_210--Hb_002681_030 Hb_001300_210--Hb_004545_020 Hb_003927_120 Hb_003927_120 Hb_001300_210--Hb_003927_120 Hb_001300_210--Hb_003750_070 Hb_001300_210--Hb_004228_080 Hb_000684_240 Hb_000684_240 Hb_002681_030--Hb_000684_240 Hb_002681_030--Hb_004228_080 Hb_000326_040 Hb_000326_040 Hb_002681_030--Hb_000326_040 Hb_007432_030 Hb_007432_030 Hb_002681_030--Hb_007432_030 Hb_004228_080--Hb_007432_030 Hb_020805_080 Hb_020805_080 Hb_004228_080--Hb_020805_080 Hb_002183_070 Hb_002183_070 Hb_004228_080--Hb_002183_070 Hb_004934_030 Hb_004934_030 Hb_004228_080--Hb_004934_030 Hb_002374_570 Hb_002374_570 Hb_004228_080--Hb_002374_570 Hb_003607_150 Hb_003607_150 Hb_004228_080--Hb_003607_150 Hb_002259_200 Hb_002259_200 Hb_004545_020--Hb_002259_200 Hb_004545_020--Hb_001252_240 Hb_001016_010 Hb_001016_010 Hb_004545_020--Hb_001016_010 Hb_008062_040 Hb_008062_040 Hb_004545_020--Hb_008062_040 Hb_023765_020 Hb_023765_020 Hb_001252_240--Hb_023765_020 Hb_000905_120 Hb_000905_120 Hb_001252_240--Hb_000905_120 Hb_007811_040 Hb_007811_040 Hb_001252_240--Hb_007811_040 Hb_010577_030 Hb_010577_030 Hb_001252_240--Hb_010577_030 Hb_000369_010 Hb_000369_010 Hb_001252_240--Hb_000369_010 Hb_010080_010 Hb_010080_010 Hb_001252_240--Hb_010080_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.20371 0.323616 7.43098 0.748746 0.435819 0.760571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.22196 3.4955 1.97004 0.343596 0

CAGE analysis