Hb_032208_040

Information

Type -
Description -
Location Contig32208: 16294-21879
Sequence    

Annotation

kegg
ID vvi:100263951
description serine/arginine-rich SC35-like splicing factor SCL30A
nr
ID XP_011048214.1
description PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
swissprot
ID Q9LHP2
description Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana GN=SCL30A PE=1 SV=1
trembl
ID F6GUK3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g00710 PE=4 SV=1
Gene Ontology
ID GO:0000166
description serine arginine-rich sc35-like splicing factor scl33

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34106: 16372-21855
cDNA
(Sanger)
(ID:Location)		 014_K13.ab1: 16372-21448 , 043_B10.ab1: 16375-21445

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032208_040 0.0 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
2 Hb_020367_050 0.0532197929 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
3 Hb_001247_130 0.0601724 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
4 Hb_004055_150 0.0661871553 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005965_030 0.071512517 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
6 Hb_006960_050 0.0738908623 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
7 Hb_001926_030 0.0744591377 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
8 Hb_005137_050 0.0759631142 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
9 Hb_000207_130 0.0777118584 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
10 Hb_079526_030 0.0793976397 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
11 Hb_000771_180 0.0796768134 - - polypyrimidine tract binding protein, putative [Ricinus communis]
12 Hb_111198_010 0.0800136951 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
13 Hb_000649_070 0.0800949256 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
14 Hb_000160_350 0.0801787634 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
15 Hb_002192_080 0.0810728876 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
16 Hb_002157_260 0.0816345344 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
17 Hb_000926_310 0.082258876 - - uncharacterized protein LOC100500241 [Glycine max]
18 Hb_006355_010 0.0839282173 - - PREDICTED: protein NLRC3 [Jatropha curcas]
19 Hb_001089_110 0.0839649448 - - conserved hypothetical protein [Ricinus communis]
20 Hb_106552_050 0.0841324236 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]

Gene co-expression network

sample Hb_032208_040 Hb_032208_040 Hb_020367_050 Hb_020367_050 Hb_032208_040--Hb_020367_050 Hb_001247_130 Hb_001247_130 Hb_032208_040--Hb_001247_130 Hb_004055_150 Hb_004055_150 Hb_032208_040--Hb_004055_150 Hb_005965_030 Hb_005965_030 Hb_032208_040--Hb_005965_030 Hb_006960_050 Hb_006960_050 Hb_032208_040--Hb_006960_050 Hb_001926_030 Hb_001926_030 Hb_032208_040--Hb_001926_030 Hb_001329_130 Hb_001329_130 Hb_020367_050--Hb_001329_130 Hb_005288_150 Hb_005288_150 Hb_020367_050--Hb_005288_150 Hb_000926_310 Hb_000926_310 Hb_020367_050--Hb_000926_310 Hb_020367_050--Hb_006960_050 Hb_007982_080 Hb_007982_080 Hb_020367_050--Hb_007982_080 Hb_005137_050 Hb_005137_050 Hb_001247_130--Hb_005137_050 Hb_001728_050 Hb_001728_050 Hb_001247_130--Hb_001728_050 Hb_004357_020 Hb_004357_020 Hb_001247_130--Hb_004357_020 Hb_001946_040 Hb_001946_040 Hb_001247_130--Hb_001946_040 Hb_000130_240 Hb_000130_240 Hb_001247_130--Hb_000130_240 Hb_004055_150--Hb_001926_030 Hb_002686_250 Hb_002686_250 Hb_004055_150--Hb_002686_250 Hb_000853_230 Hb_000853_230 Hb_004055_150--Hb_000853_230 Hb_006620_020 Hb_006620_020 Hb_004055_150--Hb_006620_020 Hb_004055_150--Hb_006960_050 Hb_005993_050 Hb_005993_050 Hb_004055_150--Hb_005993_050 Hb_000160_350 Hb_000160_350 Hb_005965_030--Hb_000160_350 Hb_002157_260 Hb_002157_260 Hb_005965_030--Hb_002157_260 Hb_004785_100 Hb_004785_100 Hb_005965_030--Hb_004785_100 Hb_000679_340 Hb_000679_340 Hb_005965_030--Hb_000679_340 Hb_003638_090 Hb_003638_090 Hb_005965_030--Hb_003638_090 Hb_022256_060 Hb_022256_060 Hb_005965_030--Hb_022256_060 Hb_000649_070 Hb_000649_070 Hb_006960_050--Hb_000649_070 Hb_006960_050--Hb_004785_100 Hb_006960_050--Hb_006620_020 Hb_006960_050--Hb_002686_250 Hb_000879_200 Hb_000879_200 Hb_001926_030--Hb_000879_200 Hb_001926_030--Hb_002686_250 Hb_001926_030--Hb_006620_020 Hb_001926_030--Hb_000853_230 Hb_000010_400 Hb_000010_400 Hb_001926_030--Hb_000010_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.6513 53.626 63.5775 26.7392 68.4154 56.2062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.2507 53.4596 39.8656 38.7601 23.6016

CAGE analysis