Hb_032208_060

Information

Type -
Description -
Location Contig32208: 30004-34327
Sequence    

Annotation

kegg
ID rcu:RCOM_0878930
description ubiquitin-conjugating enzyme E2, putative (EC:6.3.2.19)
nr
ID XP_011026860.1
description PREDICTED: constitutive photomorphogenesis protein 10 isoform X2 [Populus euphratica]
swissprot
ID Q9LJD7
description Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1
trembl
ID B9SM61
description Ubiquitin-conjugating enzyme E2, putative OS=Ricinus communis GN=RCOM_0878930 PE=4 SV=1
Gene Ontology
ID GO:0044238
description constitutive photomorphogenesis protein 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34108: 23298-29398 , PASA_asmbl_34112: 30033-34460 , PASA_asmbl_34113: 32183-32553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032208_060 0.0 - - PREDICTED: constitutive photomorphogenesis protein 10 isoform X2 [Populus euphratica]
2 Hb_001663_050 0.0768553594 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
3 Hb_012114_040 0.0875571008 - - DNA binding protein, putative [Ricinus communis]
4 Hb_028515_010 0.0885043882 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
5 Hb_005568_120 0.0906697891 - - Prephenate dehydratase [Hevea brasiliensis]
6 Hb_001481_140 0.0908160185 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
7 Hb_005883_100 0.0918475802 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
8 Hb_086639_030 0.0949273803 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
9 Hb_000496_120 0.0955875149 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
10 Hb_000175_060 0.0963262812 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
11 Hb_000820_090 0.0967332047 - - -
12 Hb_004672_010 0.0979580802 - - ecotropic viral integration site, putative [Ricinus communis]
13 Hb_000985_060 0.0981070373 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
14 Hb_011953_020 0.0991162615 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
15 Hb_114310_080 0.100452562 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005305_150 0.1014928627 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
17 Hb_000291_080 0.1021937111 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
18 Hb_000215_060 0.1072025894 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
19 Hb_000599_350 0.1074978669 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
20 Hb_004216_050 0.1079650211 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]

Gene co-expression network

sample Hb_032208_060 Hb_032208_060 Hb_001663_050 Hb_001663_050 Hb_032208_060--Hb_001663_050 Hb_012114_040 Hb_012114_040 Hb_032208_060--Hb_012114_040 Hb_028515_010 Hb_028515_010 Hb_032208_060--Hb_028515_010 Hb_005568_120 Hb_005568_120 Hb_032208_060--Hb_005568_120 Hb_001481_140 Hb_001481_140 Hb_032208_060--Hb_001481_140 Hb_005883_100 Hb_005883_100 Hb_032208_060--Hb_005883_100 Hb_086639_030 Hb_086639_030 Hb_001663_050--Hb_086639_030 Hb_001663_050--Hb_012114_040 Hb_034406_030 Hb_034406_030 Hb_001663_050--Hb_034406_030 Hb_007416_320 Hb_007416_320 Hb_001663_050--Hb_007416_320 Hb_001663_050--Hb_005568_120 Hb_012114_040--Hb_005568_120 Hb_155764_010 Hb_155764_010 Hb_012114_040--Hb_155764_010 Hb_001519_050 Hb_001519_050 Hb_012114_040--Hb_001519_050 Hb_002061_040 Hb_002061_040 Hb_012114_040--Hb_002061_040 Hb_028515_010--Hb_005568_120 Hb_004837_160 Hb_004837_160 Hb_028515_010--Hb_004837_160 Hb_000373_130 Hb_000373_130 Hb_028515_010--Hb_000373_130 Hb_003349_090 Hb_003349_090 Hb_028515_010--Hb_003349_090 Hb_114310_080 Hb_114310_080 Hb_028515_010--Hb_114310_080 Hb_000985_060 Hb_000985_060 Hb_028515_010--Hb_000985_060 Hb_002676_090 Hb_002676_090 Hb_005568_120--Hb_002676_090 Hb_011173_050 Hb_011173_050 Hb_005568_120--Hb_011173_050 Hb_004567_120 Hb_004567_120 Hb_005568_120--Hb_004567_120 Hb_005568_120--Hb_000373_130 Hb_001519_030 Hb_001519_030 Hb_001481_140--Hb_001519_030 Hb_001005_080 Hb_001005_080 Hb_001481_140--Hb_001005_080 Hb_000417_260 Hb_000417_260 Hb_001481_140--Hb_000417_260 Hb_003462_120 Hb_003462_120 Hb_001481_140--Hb_003462_120 Hb_004672_010 Hb_004672_010 Hb_001481_140--Hb_004672_010 Hb_001008_090 Hb_001008_090 Hb_001481_140--Hb_001008_090 Hb_005883_100--Hb_005568_120 Hb_012675_060 Hb_012675_060 Hb_005883_100--Hb_012675_060 Hb_000817_030 Hb_000817_030 Hb_005883_100--Hb_000817_030 Hb_001998_050 Hb_001998_050 Hb_005883_100--Hb_001998_050 Hb_001085_120 Hb_001085_120 Hb_005883_100--Hb_001085_120 Hb_005883_100--Hb_004567_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.86311 2.82668 3.36709 6.03749 3.52222 5.26334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.6531 14.2103 13.6338 9.66339 2.65008

CAGE analysis