Hb_032208_070

Information

Type -
Description -
Location Contig32208: 37849-44399
Sequence    

Annotation

kegg
ID pop:POPTR_0001s04450g
description POPTRDRAFT_639662; amino acid permease family protein
nr
ID XP_012067120.1
description PREDICTED: probable polyamine transporter At3g13620 isoform X2 [Jatropha curcas]
swissprot
ID Q9LHN7
description Probable polyamine transporter At3g13620 OS=Arabidopsis thaliana GN=At3g13620 PE=2 SV=1
trembl
ID A0A067LDG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01917 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable polyamine transporter at3g13620

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032208_070 0.0 - - PREDICTED: probable polyamine transporter At3g13620 isoform X2 [Jatropha curcas]
2 Hb_032808_020 0.1091947242 - - PREDICTED: hypersensitive-induced response protein 2 [Nicotiana tomentosiformis]
3 Hb_000261_020 0.1140931172 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
4 Hb_000053_110 0.1247711586 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007760_040 0.1264085987 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
6 Hb_003749_010 0.1317762314 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004195_270 0.1328736247 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
8 Hb_121937_010 0.1342162403 - - hypothetical protein B456_013G261900 [Gossypium raimondii]
9 Hb_000193_110 0.1363813832 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
10 Hb_171376_010 0.1382013117 - - PREDICTED: uncharacterized protein LOC105630877 isoform X1 [Jatropha curcas]
11 Hb_000529_030 0.1400304282 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_003497_040 0.1402016078 - - ATP binding protein, putative [Ricinus communis]
13 Hb_000236_390 0.1405276742 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
14 Hb_003607_050 0.1405845252 - - PREDICTED: uncharacterized protein LOC105644428 [Jatropha curcas]
15 Hb_010222_020 0.1411566168 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
16 Hb_000261_160 0.1416784124 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
17 Hb_002685_040 0.1417944804 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
18 Hb_001136_070 0.1420959668 - - Transmembrane protein TPARL, putative [Ricinus communis]
19 Hb_007441_330 0.142863729 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
20 Hb_010106_010 0.143284552 - - PREDICTED: cucumisin-like [Populus euphratica]

Gene co-expression network

sample Hb_032208_070 Hb_032208_070 Hb_032808_020 Hb_032808_020 Hb_032208_070--Hb_032808_020 Hb_000261_020 Hb_000261_020 Hb_032208_070--Hb_000261_020 Hb_000053_110 Hb_000053_110 Hb_032208_070--Hb_000053_110 Hb_007760_040 Hb_007760_040 Hb_032208_070--Hb_007760_040 Hb_003749_010 Hb_003749_010 Hb_032208_070--Hb_003749_010 Hb_004195_270 Hb_004195_270 Hb_032208_070--Hb_004195_270 Hb_002141_030 Hb_002141_030 Hb_032808_020--Hb_002141_030 Hb_000787_050 Hb_000787_050 Hb_032808_020--Hb_000787_050 Hb_000059_330 Hb_000059_330 Hb_032808_020--Hb_000059_330 Hb_001662_070 Hb_001662_070 Hb_032808_020--Hb_001662_070 Hb_000251_070 Hb_000251_070 Hb_032808_020--Hb_000251_070 Hb_004934_110 Hb_004934_110 Hb_032808_020--Hb_004934_110 Hb_000729_030 Hb_000729_030 Hb_000261_020--Hb_000729_030 Hb_000261_020--Hb_000053_110 Hb_028697_010 Hb_028697_010 Hb_000261_020--Hb_028697_010 Hb_003647_140 Hb_003647_140 Hb_000261_020--Hb_003647_140 Hb_000614_160 Hb_000614_160 Hb_000261_020--Hb_000614_160 Hb_000976_120 Hb_000976_120 Hb_000261_020--Hb_000976_120 Hb_000866_010 Hb_000866_010 Hb_000053_110--Hb_000866_010 Hb_004970_190 Hb_004970_190 Hb_000053_110--Hb_004970_190 Hb_012395_230 Hb_012395_230 Hb_000053_110--Hb_012395_230 Hb_005271_220 Hb_005271_220 Hb_000053_110--Hb_005271_220 Hb_010222_020 Hb_010222_020 Hb_000053_110--Hb_010222_020 Hb_000840_180 Hb_000840_180 Hb_007760_040--Hb_000840_180 Hb_003038_240 Hb_003038_240 Hb_007760_040--Hb_003038_240 Hb_018133_020 Hb_018133_020 Hb_007760_040--Hb_018133_020 Hb_012114_070 Hb_012114_070 Hb_007760_040--Hb_012114_070 Hb_007220_010 Hb_007220_010 Hb_007760_040--Hb_007220_010 Hb_001279_080 Hb_001279_080 Hb_007760_040--Hb_001279_080 Hb_003607_050 Hb_003607_050 Hb_003749_010--Hb_003607_050 Hb_001983_020 Hb_001983_020 Hb_003749_010--Hb_001983_020 Hb_003185_080 Hb_003185_080 Hb_003749_010--Hb_003185_080 Hb_001157_020 Hb_001157_020 Hb_003749_010--Hb_001157_020 Hb_003749_010--Hb_002141_030 Hb_003749_010--Hb_004195_270 Hb_004195_270--Hb_010222_020 Hb_000205_090 Hb_000205_090 Hb_004195_270--Hb_000205_090 Hb_118419_010 Hb_118419_010 Hb_004195_270--Hb_118419_010 Hb_004195_270--Hb_000787_050 Hb_002490_020 Hb_002490_020 Hb_004195_270--Hb_002490_020 Hb_001268_420 Hb_001268_420 Hb_004195_270--Hb_001268_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.52755 2.00381 2.78199 3.42865 2.33937 1.47132
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.556 5.02192 1.90759 0.697607 2.83575

CAGE analysis