Hb_032208_090

Information

Type -
Description -
Location Contig32208: 64593-70745
Sequence    

Annotation

kegg
ID cic:CICLE_v10015516mg
description hypothetical protein
nr
ID XP_012085034.1
description PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
swissprot
ID Q07100
description Serine/threonine-protein phosphatase PP2A-4 catalytic subunit OS=Arabidopsis thaliana GN=PP2A4 PE=2 SV=2
trembl
ID A0A067JVV1
description Serine/threonine-protein phosphatase OS=Jatropha curcas GN=JCGZ_21036 PE=3 SV=1
Gene Ontology
ID GO:0004721
description serine threonine-protein phosphatase pp2a catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34118: 64594-70712 , PASA_asmbl_34121: 67948-68063
cDNA
(Sanger)
(ID:Location)		 011_E24.ab1: 65638-70707 , 022_A17.ab1: 68563-70705

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032208_090 0.0 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
2 Hb_001009_270 0.0553012679 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
3 Hb_000579_140 0.0553655267 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000451_010 0.0605755573 - - secretory carrier membrane protein, putative [Ricinus communis]
5 Hb_003092_040 0.0663231888 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
6 Hb_011344_210 0.0669556655 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
7 Hb_000618_040 0.067340029 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
8 Hb_000175_460 0.0673871244 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
9 Hb_007416_280 0.0674502576 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000656_040 0.0694720291 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
11 Hb_001799_210 0.0704759769 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
12 Hb_002774_060 0.0723563823 - - PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]
13 Hb_004907_080 0.0726317906 - - zinc finger protein, putative [Ricinus communis]
14 Hb_000019_030 0.0727764216 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
15 Hb_011671_240 0.0734730222 - - PREDICTED: WD repeat-containing protein WRAP73-like [Jatropha curcas]
16 Hb_000329_030 0.0757911148 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
17 Hb_019280_040 0.0808283158 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_001575_090 0.0811479739 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
19 Hb_005357_080 0.0816606594 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
20 Hb_003177_030 0.0827004552 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]

Gene co-expression network

sample Hb_032208_090 Hb_032208_090 Hb_001009_270 Hb_001009_270 Hb_032208_090--Hb_001009_270 Hb_000579_140 Hb_000579_140 Hb_032208_090--Hb_000579_140 Hb_000451_010 Hb_000451_010 Hb_032208_090--Hb_000451_010 Hb_003092_040 Hb_003092_040 Hb_032208_090--Hb_003092_040 Hb_011344_210 Hb_011344_210 Hb_032208_090--Hb_011344_210 Hb_000618_040 Hb_000618_040 Hb_032208_090--Hb_000618_040 Hb_004907_080 Hb_004907_080 Hb_001009_270--Hb_004907_080 Hb_003177_030 Hb_003177_030 Hb_001009_270--Hb_003177_030 Hb_000777_040 Hb_000777_040 Hb_001009_270--Hb_000777_040 Hb_001799_210 Hb_001799_210 Hb_001009_270--Hb_001799_210 Hb_000465_160 Hb_000465_160 Hb_001009_270--Hb_000465_160 Hb_000329_030 Hb_000329_030 Hb_000579_140--Hb_000329_030 Hb_000579_140--Hb_003092_040 Hb_001818_090 Hb_001818_090 Hb_000579_140--Hb_001818_090 Hb_000656_040 Hb_000656_040 Hb_000579_140--Hb_000656_040 Hb_007416_280 Hb_007416_280 Hb_000579_140--Hb_007416_280 Hb_000451_010--Hb_000618_040 Hb_011671_240 Hb_011671_240 Hb_000451_010--Hb_011671_240 Hb_000451_010--Hb_004907_080 Hb_007904_200 Hb_007904_200 Hb_000451_010--Hb_007904_200 Hb_000010_330 Hb_000010_330 Hb_000451_010--Hb_000010_330 Hb_003092_040--Hb_007416_280 Hb_005663_060 Hb_005663_060 Hb_003092_040--Hb_005663_060 Hb_000510_130 Hb_000510_130 Hb_003092_040--Hb_000510_130 Hb_007691_030 Hb_007691_030 Hb_003092_040--Hb_007691_030 Hb_032202_190 Hb_032202_190 Hb_003092_040--Hb_032202_190 Hb_003126_050 Hb_003126_050 Hb_003092_040--Hb_003126_050 Hb_000580_180 Hb_000580_180 Hb_011344_210--Hb_000580_180 Hb_011344_210--Hb_001009_270 Hb_000815_320 Hb_000815_320 Hb_011344_210--Hb_000815_320 Hb_005846_040 Hb_005846_040 Hb_011344_210--Hb_005846_040 Hb_011344_210--Hb_003126_050 Hb_005357_080 Hb_005357_080 Hb_000618_040--Hb_005357_080 Hb_008511_130 Hb_008511_130 Hb_000618_040--Hb_008511_130 Hb_000618_040--Hb_007416_280 Hb_000019_030 Hb_000019_030 Hb_000618_040--Hb_000019_030 Hb_000230_560 Hb_000230_560 Hb_000618_040--Hb_000230_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.0782 30.055 40.6355 50.677 49.5678 62.5517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.8308 60.854 78.1402 34.1702 17.8712

CAGE analysis