Hb_032215_050

Information

Type -
Description -
Location Contig32215: 89898-91463
Sequence    

Annotation

kegg
ID rcu:RCOM_0369980
description Xyloglucan galactosyltransferase KATAMARI1, putative
nr
ID XP_002532518.1
description Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
swissprot
ID Q7XJ98
description Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1
trembl
ID B9T2P9
description Xyloglucan galactosyltransferase KATAMARI1, putative OS=Ricinus communis GN=RCOM_0369980 PE=4 SV=1
Gene Ontology
ID GO:0005618
description exostosin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032215_050 0.0 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
2 Hb_003943_040 0.1012937036 - - DNA binding protein, putative [Ricinus communis]
3 Hb_000080_190 0.1016884126 - - -
4 Hb_003206_070 0.1088057995 - - organic anion transporter, putative [Ricinus communis]
5 Hb_002903_090 0.1091393703 - - sugar transporter, putative [Ricinus communis]
6 Hb_004724_420 0.1152006235 - - fucose synthetase, putative [Ricinus communis]
7 Hb_002687_110 0.1159952974 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
8 Hb_005625_020 0.1168081497 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 [Jatropha curcas]
9 Hb_000409_020 0.1189534106 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
10 Hb_002769_050 0.1205505363 - - PREDICTED: endophilin-A1 [Jatropha curcas]
11 Hb_000928_020 0.1227541477 - - hypothetical protein CICLE_v10013682mg [Citrus clementina]
12 Hb_000699_140 0.1235707723 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
13 Hb_004204_140 0.1239730974 transcription factor TF Family: C2H2 hypothetical protein RCOM_1470470 [Ricinus communis]
14 Hb_004046_020 0.124209122 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
15 Hb_017110_010 0.1264165232 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g55760 [Jatropha curcas]
16 Hb_000363_160 0.1282465718 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
17 Hb_011316_040 0.1282606236 - - peptidase, putative [Ricinus communis]
18 Hb_001051_100 0.1286118004 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
19 Hb_010172_080 0.1309995606 - - acetylglucosaminyltransferase, putative [Ricinus communis]
20 Hb_002046_190 0.1310020882 - - calcium-binding family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_032215_050 Hb_032215_050 Hb_003943_040 Hb_003943_040 Hb_032215_050--Hb_003943_040 Hb_000080_190 Hb_000080_190 Hb_032215_050--Hb_000080_190 Hb_003206_070 Hb_003206_070 Hb_032215_050--Hb_003206_070 Hb_002903_090 Hb_002903_090 Hb_032215_050--Hb_002903_090 Hb_004724_420 Hb_004724_420 Hb_032215_050--Hb_004724_420 Hb_002687_110 Hb_002687_110 Hb_032215_050--Hb_002687_110 Hb_003943_040--Hb_002687_110 Hb_004738_040 Hb_004738_040 Hb_003943_040--Hb_004738_040 Hb_001277_330 Hb_001277_330 Hb_003943_040--Hb_001277_330 Hb_000409_020 Hb_000409_020 Hb_003943_040--Hb_000409_020 Hb_011316_040 Hb_011316_040 Hb_003943_040--Hb_011316_040 Hb_003943_040--Hb_004724_420 Hb_000080_190--Hb_002687_110 Hb_005625_020 Hb_005625_020 Hb_000080_190--Hb_005625_020 Hb_000898_040 Hb_000898_040 Hb_000080_190--Hb_000898_040 Hb_000080_190--Hb_004738_040 Hb_009048_040 Hb_009048_040 Hb_000080_190--Hb_009048_040 Hb_000080_190--Hb_000409_020 Hb_003206_070--Hb_000409_020 Hb_001818_090 Hb_001818_090 Hb_003206_070--Hb_001818_090 Hb_000676_250 Hb_000676_250 Hb_003206_070--Hb_000676_250 Hb_005663_060 Hb_005663_060 Hb_003206_070--Hb_005663_060 Hb_003177_030 Hb_003177_030 Hb_003206_070--Hb_003177_030 Hb_007441_120 Hb_007441_120 Hb_003206_070--Hb_007441_120 Hb_000446_090 Hb_000446_090 Hb_002903_090--Hb_000446_090 Hb_002903_090--Hb_000080_190 Hb_002903_090--Hb_003943_040 Hb_002903_090--Hb_005625_020 Hb_004046_020 Hb_004046_020 Hb_002903_090--Hb_004046_020 Hb_183086_060 Hb_183086_060 Hb_004724_420--Hb_183086_060 Hb_004109_190 Hb_004109_190 Hb_004724_420--Hb_004109_190 Hb_000041_050 Hb_000041_050 Hb_004724_420--Hb_000041_050 Hb_000700_110 Hb_000700_110 Hb_004724_420--Hb_000700_110 Hb_000614_230 Hb_000614_230 Hb_004724_420--Hb_000614_230 Hb_005289_030 Hb_005289_030 Hb_004724_420--Hb_005289_030 Hb_000431_010 Hb_000431_010 Hb_002687_110--Hb_000431_010 Hb_002687_110--Hb_004738_040 Hb_002687_110--Hb_001277_330 Hb_002687_110--Hb_000409_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3522 1.46811 2.33744 8.83643 6.77852 10.9873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.5412 7.52987 16.7662 4.22598 4.3127

CAGE analysis