Hb_032223_020

Information

Type -
Description -
Location Contig32223: 29511-31472
Sequence    

Annotation

kegg
ID rcu:RCOM_0503990
description ATP binding protein, putative (EC:2.7.10.2)
nr
ID XP_002530716.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9FG33
description Probable L-type lectin-domain containing receptor kinase S.5 OS=Arabidopsis thaliana GN=LECRKS5 PE=2 SV=1
trembl
ID B9SXJ7
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0503990 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable l-type lectin-domain containing receptor kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34125: 29990-30359
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032223_020 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_178703_010 0.0475596739 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
3 Hb_006573_250 0.1000839118 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
4 Hb_008376_020 0.116841367 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
5 Hb_000645_250 0.1220445641 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
6 Hb_001949_010 0.1224973293 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
7 Hb_005550_040 0.1318097248 - - PREDICTED: epoxide hydrolase 4-like [Jatropha curcas]
8 Hb_000609_020 0.1360112216 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
9 Hb_003189_020 0.1375576598 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
10 Hb_001004_130 0.1398124758 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
11 Hb_010334_050 0.1452192461 - - conserved hypothetical protein [Ricinus communis]
12 Hb_079394_010 0.1482318823 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
13 Hb_000373_060 0.14889973 - - PREDICTED: extensin-3 [Camelina sativa]
14 Hb_000847_120 0.1511963054 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
15 Hb_000751_050 0.1578782133 - - PREDICTED: extensin, partial [Solanum lycopersicum]
16 Hb_146930_010 0.1582876751 - - -
17 Hb_000751_060 0.158732743 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
18 Hb_116190_010 0.1598364322 - - PREDICTED: uncharacterized protein LOC105118535 [Populus euphratica]
19 Hb_000000_200 0.1606777701 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
20 Hb_004881_080 0.1610020451 - - PREDICTED: glycerol-3-phosphate acyltransferase 1 [Populus euphratica]

Gene co-expression network

sample Hb_032223_020 Hb_032223_020 Hb_178703_010 Hb_178703_010 Hb_032223_020--Hb_178703_010 Hb_006573_250 Hb_006573_250 Hb_032223_020--Hb_006573_250 Hb_008376_020 Hb_008376_020 Hb_032223_020--Hb_008376_020 Hb_000645_250 Hb_000645_250 Hb_032223_020--Hb_000645_250 Hb_001949_010 Hb_001949_010 Hb_032223_020--Hb_001949_010 Hb_005550_040 Hb_005550_040 Hb_032223_020--Hb_005550_040 Hb_178703_010--Hb_005550_040 Hb_178703_010--Hb_006573_250 Hb_003189_020 Hb_003189_020 Hb_178703_010--Hb_003189_020 Hb_178703_010--Hb_001949_010 Hb_000751_050 Hb_000751_050 Hb_178703_010--Hb_000751_050 Hb_001004_130 Hb_001004_130 Hb_006573_250--Hb_001004_130 Hb_001597_110 Hb_001597_110 Hb_006573_250--Hb_001597_110 Hb_006573_250--Hb_008376_020 Hb_032631_080 Hb_032631_080 Hb_006573_250--Hb_032631_080 Hb_000609_020 Hb_000609_020 Hb_008376_020--Hb_000609_020 Hb_000847_120 Hb_000847_120 Hb_008376_020--Hb_000847_120 Hb_008376_020--Hb_001004_130 Hb_000000_200 Hb_000000_200 Hb_008376_020--Hb_000000_200 Hb_008376_020--Hb_000645_250 Hb_000751_060 Hb_000751_060 Hb_000645_250--Hb_000751_060 Hb_000645_250--Hb_000847_120 Hb_060152_010 Hb_060152_010 Hb_000645_250--Hb_060152_010 Hb_000751_070 Hb_000751_070 Hb_000645_250--Hb_000751_070 Hb_000645_250--Hb_000609_020 Hb_001949_010--Hb_005550_040 Hb_011576_010 Hb_011576_010 Hb_001949_010--Hb_011576_010 Hb_001949_010--Hb_000751_050 Hb_000061_360 Hb_000061_360 Hb_001949_010--Hb_000061_360 Hb_005550_040--Hb_003189_020 Hb_005550_040--Hb_000061_360 Hb_046770_010 Hb_046770_010 Hb_005550_040--Hb_046770_010 Hb_105134_010 Hb_105134_010 Hb_005550_040--Hb_105134_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.023396 0.0306749 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.101053 0.0383137

CAGE analysis