Hb_032225_010

Information

Type -
Description -
Location Contig32225: 9118-10163
Sequence    

Annotation

kegg
ID rcu:RCOM_1667720
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002514493.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID Q0JAA0
description Probable protein phosphatase 2C 44 OS=Oryza sativa subsp. japonica GN=Os04g0609600 PE=2 SV=1
trembl
ID B9RL74
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_1667720 PE=4 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 44

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34126: 9037-25306
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032225_010 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_007881_030 0.0795521278 - - Protein YME1, putative [Ricinus communis]
3 Hb_007101_300 0.0851380224 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
4 Hb_003038_210 0.0860247043 - - hypothetical protein B456_006G076400 [Gossypium raimondii]
5 Hb_000092_170 0.0863399713 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
6 Hb_000696_330 0.090936994 - - PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]
7 Hb_002701_020 0.0921428455 - - PREDICTED: transcription factor BIM2 [Jatropha curcas]
8 Hb_000656_170 0.093162071 - - lsm1, putative [Ricinus communis]
9 Hb_002620_020 0.0951393962 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
10 Hb_000421_220 0.0960196938 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
11 Hb_002182_080 0.0961291444 - - 3-5 exonuclease, putative [Ricinus communis]
12 Hb_000120_460 0.0992138002 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
13 Hb_002835_080 0.1007251741 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
14 Hb_001168_020 0.1014106094 - - PREDICTED: translation initiation factor eIF-2B subunit gamma [Jatropha curcas]
15 Hb_000058_060 0.1018990448 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
16 Hb_003777_320 0.1025660405 - - PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Jatropha curcas]
17 Hb_000635_250 0.1030208865 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
18 Hb_002078_350 0.1034968626 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
19 Hb_003125_010 0.1036181415 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
20 Hb_033594_120 0.1037892515 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]

Gene co-expression network

sample Hb_032225_010 Hb_032225_010 Hb_007881_030 Hb_007881_030 Hb_032225_010--Hb_007881_030 Hb_007101_300 Hb_007101_300 Hb_032225_010--Hb_007101_300 Hb_003038_210 Hb_003038_210 Hb_032225_010--Hb_003038_210 Hb_000092_170 Hb_000092_170 Hb_032225_010--Hb_000092_170 Hb_000696_330 Hb_000696_330 Hb_032225_010--Hb_000696_330 Hb_002701_020 Hb_002701_020 Hb_032225_010--Hb_002701_020 Hb_003777_320 Hb_003777_320 Hb_007881_030--Hb_003777_320 Hb_144528_010 Hb_144528_010 Hb_007881_030--Hb_144528_010 Hb_000635_250 Hb_000635_250 Hb_007881_030--Hb_000635_250 Hb_001538_130 Hb_001538_130 Hb_007881_030--Hb_001538_130 Hb_007881_030--Hb_000092_170 Hb_003389_040 Hb_003389_040 Hb_007101_300--Hb_003389_040 Hb_000032_380 Hb_000032_380 Hb_007101_300--Hb_000032_380 Hb_008226_060 Hb_008226_060 Hb_007101_300--Hb_008226_060 Hb_001225_080 Hb_001225_080 Hb_007101_300--Hb_001225_080 Hb_000417_040 Hb_000417_040 Hb_007101_300--Hb_000417_040 Hb_005489_060 Hb_005489_060 Hb_007101_300--Hb_005489_060 Hb_000111_380 Hb_000111_380 Hb_003038_210--Hb_000111_380 Hb_002473_130 Hb_002473_130 Hb_003038_210--Hb_002473_130 Hb_003038_210--Hb_007101_300 Hb_002271_020 Hb_002271_020 Hb_003038_210--Hb_002271_020 Hb_020665_040 Hb_020665_040 Hb_003038_210--Hb_020665_040 Hb_003525_010 Hb_003525_010 Hb_000092_170--Hb_003525_010 Hb_044728_010 Hb_044728_010 Hb_000092_170--Hb_044728_010 Hb_000107_330 Hb_000107_330 Hb_000092_170--Hb_000107_330 Hb_011485_070 Hb_011485_070 Hb_000092_170--Hb_011485_070 Hb_002078_350 Hb_002078_350 Hb_000092_170--Hb_002078_350 Hb_009767_110 Hb_009767_110 Hb_000092_170--Hb_009767_110 Hb_000078_120 Hb_000078_120 Hb_000696_330--Hb_000078_120 Hb_011386_010 Hb_011386_010 Hb_000696_330--Hb_011386_010 Hb_004143_060 Hb_004143_060 Hb_000696_330--Hb_004143_060 Hb_000696_330--Hb_002078_350 Hb_000331_260 Hb_000331_260 Hb_000696_330--Hb_000331_260 Hb_001168_020 Hb_001168_020 Hb_000696_330--Hb_001168_020 Hb_002835_080 Hb_002835_080 Hb_002701_020--Hb_002835_080 Hb_000227_080 Hb_000227_080 Hb_002701_020--Hb_000227_080 Hb_003929_250 Hb_003929_250 Hb_002701_020--Hb_003929_250 Hb_000428_050 Hb_000428_050 Hb_002701_020--Hb_000428_050 Hb_009265_070 Hb_009265_070 Hb_002701_020--Hb_009265_070 Hb_000056_200 Hb_000056_200 Hb_002701_020--Hb_000056_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5706 17.766 10.4474 18.9343 13.7954 33.6836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.7554 37.0461 24.1664 15.2084 16.5929

CAGE analysis