Hb_032225_030

Information

Type -
Description -
Location Contig32225: 27877-30144
Sequence    

Annotation

kegg
ID rcu:RCOM_1667710
description LRX2, putative (EC:1.3.1.74)
nr
ID XP_012084300.1
description PREDICTED: leucine-rich repeat extensin-like protein 2 [Jatropha curcas]
swissprot
ID O65375
description Leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=LRX1 PE=1 SV=1
trembl
ID A0A067JYB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19787 PE=4 SV=1
Gene Ontology
ID GO:0005515
description leucine-rich repeat extensin-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34128: 28035-28185
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032225_030 0.0 - - PREDICTED: leucine-rich repeat extensin-like protein 2 [Jatropha curcas]
2 Hb_042509_020 0.1526128881 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
3 Hb_007545_140 0.1558882679 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
4 Hb_001369_140 0.1725698785 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001170_010 0.1726248333 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
6 Hb_000110_380 0.1737273537 - - PREDICTED: uncharacterized protein LOC105642019 [Jatropha curcas]
7 Hb_030982_060 0.1809122501 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003893_140 0.1835353749 - - palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
9 Hb_003972_060 0.1886480533 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
10 Hb_002835_350 0.196863852 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
11 Hb_011947_020 0.198186318 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
12 Hb_004195_090 0.1999148698 - - PREDICTED: probable mitochondrial chaperone bcs1 [Jatropha curcas]
13 Hb_005813_010 0.2016715745 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
14 Hb_001021_030 0.2024522564 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
15 Hb_000186_290 0.2042252931 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
16 Hb_064122_010 0.2046551175 - - PREDICTED: uncharacterized protein LOC105631858 isoform X2 [Jatropha curcas]
17 Hb_028001_020 0.2064202627 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
18 Hb_004324_030 0.2075474417 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
19 Hb_001014_190 0.2083300341 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
20 Hb_005181_180 0.2088951495 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_032225_030 Hb_032225_030 Hb_042509_020 Hb_042509_020 Hb_032225_030--Hb_042509_020 Hb_007545_140 Hb_007545_140 Hb_032225_030--Hb_007545_140 Hb_001369_140 Hb_001369_140 Hb_032225_030--Hb_001369_140 Hb_001170_010 Hb_001170_010 Hb_032225_030--Hb_001170_010 Hb_000110_380 Hb_000110_380 Hb_032225_030--Hb_000110_380 Hb_030982_060 Hb_030982_060 Hb_032225_030--Hb_030982_060 Hb_000181_210 Hb_000181_210 Hb_042509_020--Hb_000181_210 Hb_004324_030 Hb_004324_030 Hb_042509_020--Hb_004324_030 Hb_000834_040 Hb_000834_040 Hb_042509_020--Hb_000834_040 Hb_000832_280 Hb_000832_280 Hb_042509_020--Hb_000832_280 Hb_026549_050 Hb_026549_050 Hb_042509_020--Hb_026549_050 Hb_001159_170 Hb_001159_170 Hb_042509_020--Hb_001159_170 Hb_002597_010 Hb_002597_010 Hb_007545_140--Hb_002597_010 Hb_005152_010 Hb_005152_010 Hb_007545_140--Hb_005152_010 Hb_000589_210 Hb_000589_210 Hb_007545_140--Hb_000589_210 Hb_007545_140--Hb_001369_140 Hb_000380_210 Hb_000380_210 Hb_007545_140--Hb_000380_210 Hb_064122_010 Hb_064122_010 Hb_001369_140--Hb_064122_010 Hb_001369_140--Hb_000380_210 Hb_000080_080 Hb_000080_080 Hb_001369_140--Hb_000080_080 Hb_009780_110 Hb_009780_110 Hb_001369_140--Hb_009780_110 Hb_001369_140--Hb_002597_010 Hb_009736_010 Hb_009736_010 Hb_001170_010--Hb_009736_010 Hb_001170_010--Hb_000110_380 Hb_004195_090 Hb_004195_090 Hb_001170_010--Hb_004195_090 Hb_029921_030 Hb_029921_030 Hb_001170_010--Hb_029921_030 Hb_001170_010--Hb_030982_060 Hb_005813_010 Hb_005813_010 Hb_000110_380--Hb_005813_010 Hb_028001_020 Hb_028001_020 Hb_000110_380--Hb_028001_020 Hb_002539_040 Hb_002539_040 Hb_000110_380--Hb_002539_040 Hb_005408_070 Hb_005408_070 Hb_000110_380--Hb_005408_070 Hb_011947_020 Hb_011947_020 Hb_030982_060--Hb_011947_020 Hb_001439_110 Hb_001439_110 Hb_030982_060--Hb_001439_110 Hb_000922_010 Hb_000922_010 Hb_030982_060--Hb_000922_010 Hb_003592_030 Hb_003592_030 Hb_030982_060--Hb_003592_030 Hb_000189_590 Hb_000189_590 Hb_030982_060--Hb_000189_590
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.21148 2.96598 1.49957 11.4655 0.257265 0.0618202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.15922 1.32957 0.617604 12.7117 1.27863

CAGE analysis