Hb_032260_030

Information

Type -
Description -
Location Contig32260: 14087-16407
Sequence    

Annotation

kegg
ID pop:POPTR_0001s10500g
description POPTRDRAFT_709188; hypothetical protein
nr
ID XP_002297982.1
description hypothetical protein POPTR_0001s10500g [Populus trichocarpa]
swissprot
ID Q499B3
description KAT8 regulatory NSL complex subunit 3 OS=Danio rerio GN=kansl3 PE=2 SV=1
trembl
ID B9GL72
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s10500g PE=4 SV=1
Gene Ontology
ID GO:0016787
description kat8 regulatory nsl complex subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34195: 13974-14167 , PASA_asmbl_34196: 14641-16297
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032260_030 0.0 - - hypothetical protein POPTR_0001s10500g [Populus trichocarpa]
2 Hb_001016_090 0.0522854301 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
3 Hb_000881_080 0.0690635489 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002925_030 0.0726501381 - - 40S ribosomal protein S16B [Hevea brasiliensis]
5 Hb_005883_100 0.0831639678 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
6 Hb_001863_090 0.0841308161 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
7 Hb_003398_120 0.0841597776 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
8 Hb_000215_060 0.0862344812 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
9 Hb_000363_480 0.0877450471 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
10 Hb_001565_080 0.0885731813 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
11 Hb_000349_290 0.0897455237 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
12 Hb_002374_390 0.0919427315 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
13 Hb_006478_150 0.0937841865 - - mitochondrial ribosomal protein L24, putative [Ricinus communis]
14 Hb_003185_050 0.0952828277 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
15 Hb_001085_270 0.0954838664 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
16 Hb_001832_120 0.0959866675 - - hypothetical protein PHAVU_003G136800g [Phaseolus vulgaris]
17 Hb_011311_010 0.0973267743 - - 60S ribosomal protein L27C [Hevea brasiliensis]
18 Hb_000193_120 0.097973261 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
19 Hb_026048_070 0.0994389483 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
20 Hb_000264_090 0.0994415984 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_032260_030 Hb_032260_030 Hb_001016_090 Hb_001016_090 Hb_032260_030--Hb_001016_090 Hb_000881_080 Hb_000881_080 Hb_032260_030--Hb_000881_080 Hb_002925_030 Hb_002925_030 Hb_032260_030--Hb_002925_030 Hb_005883_100 Hb_005883_100 Hb_032260_030--Hb_005883_100 Hb_001863_090 Hb_001863_090 Hb_032260_030--Hb_001863_090 Hb_003398_120 Hb_003398_120 Hb_032260_030--Hb_003398_120 Hb_002374_390 Hb_002374_390 Hb_001016_090--Hb_002374_390 Hb_148200_010 Hb_148200_010 Hb_001016_090--Hb_148200_010 Hb_001016_090--Hb_002925_030 Hb_000905_180 Hb_000905_180 Hb_001016_090--Hb_000905_180 Hb_148930_010 Hb_148930_010 Hb_001016_090--Hb_148930_010 Hb_007304_070 Hb_007304_070 Hb_000881_080--Hb_007304_070 Hb_000881_080--Hb_000905_180 Hb_000881_080--Hb_001016_090 Hb_000236_150 Hb_000236_150 Hb_000881_080--Hb_000236_150 Hb_001780_050 Hb_001780_050 Hb_000881_080--Hb_001780_050 Hb_002925_030--Hb_003398_120 Hb_001998_050 Hb_001998_050 Hb_002925_030--Hb_001998_050 Hb_000227_230 Hb_000227_230 Hb_002925_030--Hb_000227_230 Hb_002925_030--Hb_001863_090 Hb_002713_070 Hb_002713_070 Hb_002925_030--Hb_002713_070 Hb_011311_010 Hb_011311_010 Hb_002925_030--Hb_011311_010 Hb_005568_120 Hb_005568_120 Hb_005883_100--Hb_005568_120 Hb_012675_060 Hb_012675_060 Hb_005883_100--Hb_012675_060 Hb_000817_030 Hb_000817_030 Hb_005883_100--Hb_000817_030 Hb_005883_100--Hb_001998_050 Hb_001085_120 Hb_001085_120 Hb_005883_100--Hb_001085_120 Hb_004567_120 Hb_004567_120 Hb_005883_100--Hb_004567_120 Hb_001863_090--Hb_011311_010 Hb_002660_030 Hb_002660_030 Hb_001863_090--Hb_002660_030 Hb_001863_090--Hb_001016_090 Hb_001863_090--Hb_003398_120 Hb_001248_080 Hb_001248_080 Hb_003398_120--Hb_001248_080 Hb_003398_120--Hb_000227_230 Hb_003398_120--Hb_001998_050 Hb_003398_120--Hb_148930_010 Hb_003398_120--Hb_011311_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.02134 5.31529 3.13319 5.57924 6.76869 7.06034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.046 34.0552 15.6081 12.4361 3.37068

CAGE analysis