Hb_032260_040

Information

Type -
Description -
Location Contig32260: 20308-20742
Sequence    

Annotation

kegg
ID rcu:RCOM_1691450
description hypothetical protein
nr
ID XP_002509943.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCQ9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34197: 20002-20791
cDNA
(Sanger)
(ID:Location)		 004_N18.ab1: 20112-20785

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032260_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003711_050 0.06963303 - - Isoflavone reductase, putative [Ricinus communis]
3 Hb_012217_010 0.0757966277 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
4 Hb_008406_170 0.0832947157 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000201_050 0.084169466 - - -
6 Hb_021443_010 0.0859955179 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
7 Hb_000853_140 0.0900172107 - - hypothetical protein POPTR_0014s12080g [Populus trichocarpa]
8 Hb_000438_180 0.0951790954 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
9 Hb_000349_280 0.0958399552 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011930_090 0.0980169494 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
11 Hb_007441_100 0.1018645678 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]
12 Hb_001269_430 0.10325813 - - hypothetical protein JCGZ_04286 [Jatropha curcas]
13 Hb_001584_250 0.1092823144 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
14 Hb_027746_030 0.1097315449 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001401_110 0.1114947775 - - hypothetical protein JCGZ_04272 [Jatropha curcas]
16 Hb_002186_170 0.1148012074 - - hypothetical protein POPTR_0067s00200g [Populus trichocarpa]
17 Hb_002835_120 0.1149192592 - - PREDICTED: uncharacterized protein LOC105640304 [Jatropha curcas]
18 Hb_001541_170 0.1194689477 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
19 Hb_005588_050 0.1209659036 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006618_100 0.1214720137 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]

Gene co-expression network

sample Hb_032260_040 Hb_032260_040 Hb_003711_050 Hb_003711_050 Hb_032260_040--Hb_003711_050 Hb_012217_010 Hb_012217_010 Hb_032260_040--Hb_012217_010 Hb_008406_170 Hb_008406_170 Hb_032260_040--Hb_008406_170 Hb_000201_050 Hb_000201_050 Hb_032260_040--Hb_000201_050 Hb_021443_010 Hb_021443_010 Hb_032260_040--Hb_021443_010 Hb_000853_140 Hb_000853_140 Hb_032260_040--Hb_000853_140 Hb_003711_050--Hb_021443_010 Hb_000438_180 Hb_000438_180 Hb_003711_050--Hb_000438_180 Hb_003711_050--Hb_000201_050 Hb_001584_250 Hb_001584_250 Hb_003711_050--Hb_001584_250 Hb_003711_050--Hb_000853_140 Hb_011930_090 Hb_011930_090 Hb_012217_010--Hb_011930_090 Hb_007441_100 Hb_007441_100 Hb_012217_010--Hb_007441_100 Hb_000847_110 Hb_000847_110 Hb_012217_010--Hb_000847_110 Hb_001541_170 Hb_001541_170 Hb_012217_010--Hb_001541_170 Hb_019299_010 Hb_019299_010 Hb_012217_010--Hb_019299_010 Hb_008406_170--Hb_000853_140 Hb_001269_430 Hb_001269_430 Hb_008406_170--Hb_001269_430 Hb_002835_120 Hb_002835_120 Hb_008406_170--Hb_002835_120 Hb_008406_170--Hb_012217_010 Hb_008406_170--Hb_003711_050 Hb_000201_050--Hb_001584_250 Hb_001502_010 Hb_001502_010 Hb_000201_050--Hb_001502_010 Hb_027746_030 Hb_027746_030 Hb_000201_050--Hb_027746_030 Hb_000422_060 Hb_000422_060 Hb_000201_050--Hb_000422_060 Hb_021443_010--Hb_000438_180 Hb_021443_010--Hb_001584_250 Hb_001401_110 Hb_001401_110 Hb_021443_010--Hb_001401_110 Hb_021443_010--Hb_000201_050 Hb_000953_110 Hb_000953_110 Hb_000853_140--Hb_000953_110 Hb_004158_040 Hb_004158_040 Hb_000853_140--Hb_004158_040 Hb_007545_220 Hb_007545_220 Hb_000853_140--Hb_007545_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.52938 242.964 42.3356 1205.42 7.87732 7.63378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.1935 2.41057 0 0.622391 157.069

CAGE analysis