Hb_032260_060

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig32260: 35154-37406
Sequence    

Annotation

kegg
ID tcc:TCM_016428
description Homeodomain-like superfamily protein
nr
ID XP_007040481.1
description Homeodomain-like superfamily protein [Theobroma cacao]
swissprot
ID Q8GV05
description Transcription factor TRY OS=Arabidopsis thaliana GN=TRY PE=1 SV=1
trembl
ID A0A061G715
description Homeodomain-like superfamily protein OS=Theobroma cacao GN=TCM_016428 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor cpc-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34198: 34925-35061 , PASA_asmbl_34199: 35153-37620
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032260_060 0.0 transcription factor TF Family: MYB-related Homeodomain-like superfamily protein [Theobroma cacao]
2 Hb_004330_040 0.0416453697 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001473_060 0.0627910061 - - PREDICTED: gibberellin 2-beta-dioxygenase 8 [Jatropha curcas]
4 Hb_003754_020 0.0763764433 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_093218_010 0.076518474 - - hypothetical protein POPTR_0001s05220g [Populus trichocarpa]
6 Hb_000714_060 0.078184179 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Populus euphratica]
7 Hb_000310_110 0.0931985194 - - PREDICTED: probable trehalose-phosphate phosphatase F isoform X1 [Jatropha curcas]
8 Hb_002045_010 0.1081539434 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
9 Hb_009767_060 0.1165948728 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
10 Hb_000951_090 0.1207138538 - - Oligopeptide transporter, putative [Ricinus communis]
11 Hb_002805_180 0.122869338 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007290_050 0.1231131669 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
13 Hb_001104_020 0.1233028181 - - DNA binding protein, putative [Ricinus communis]
14 Hb_005181_170 0.1244850249 - - PREDICTED: aldehyde dehydrogenase 22A1 [Jatropha curcas]
15 Hb_000112_080 0.128322974 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
16 Hb_010264_020 0.1302037456 - - unnamed protein product [Vitis vinifera]
17 Hb_009189_100 0.1329376688 - - PREDICTED: patellin-6 [Jatropha curcas]
18 Hb_004055_090 0.1335555541 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
19 Hb_001348_010 0.1350119039 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
20 Hb_000668_050 0.1356954064 - - phosphoglycerate mutase, putative [Ricinus communis]

Gene co-expression network

sample Hb_032260_060 Hb_032260_060 Hb_004330_040 Hb_004330_040 Hb_032260_060--Hb_004330_040 Hb_001473_060 Hb_001473_060 Hb_032260_060--Hb_001473_060 Hb_003754_020 Hb_003754_020 Hb_032260_060--Hb_003754_020 Hb_093218_010 Hb_093218_010 Hb_032260_060--Hb_093218_010 Hb_000714_060 Hb_000714_060 Hb_032260_060--Hb_000714_060 Hb_000310_110 Hb_000310_110 Hb_032260_060--Hb_000310_110 Hb_004330_040--Hb_001473_060 Hb_004330_040--Hb_003754_020 Hb_005181_170 Hb_005181_170 Hb_004330_040--Hb_005181_170 Hb_004330_040--Hb_000310_110 Hb_002045_010 Hb_002045_010 Hb_004330_040--Hb_002045_010 Hb_001473_060--Hb_003754_020 Hb_001473_060--Hb_000714_060 Hb_000668_050 Hb_000668_050 Hb_001473_060--Hb_000668_050 Hb_001473_060--Hb_093218_010 Hb_004055_090 Hb_004055_090 Hb_003754_020--Hb_004055_090 Hb_002276_250 Hb_002276_250 Hb_003754_020--Hb_002276_250 Hb_004357_030 Hb_004357_030 Hb_003754_020--Hb_004357_030 Hb_093218_010--Hb_000714_060 Hb_001104_020 Hb_001104_020 Hb_093218_010--Hb_001104_020 Hb_000951_090 Hb_000951_090 Hb_093218_010--Hb_000951_090 Hb_033772_060 Hb_033772_060 Hb_093218_010--Hb_033772_060 Hb_005892_040 Hb_005892_040 Hb_093218_010--Hb_005892_040 Hb_000714_060--Hb_000951_090 Hb_005731_070 Hb_005731_070 Hb_000714_060--Hb_005731_070 Hb_000714_060--Hb_001104_020 Hb_009189_100 Hb_009189_100 Hb_000310_110--Hb_009189_100 Hb_003935_040 Hb_003935_040 Hb_000310_110--Hb_003935_040 Hb_000162_190 Hb_000162_190 Hb_000310_110--Hb_000162_190 Hb_007290_050 Hb_007290_050 Hb_000310_110--Hb_007290_050 Hb_000345_230 Hb_000345_230 Hb_000310_110--Hb_000345_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.02661 34.044 45.4896 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 18.1569 15.4267

CAGE analysis