Hb_032260_110

Information

Type -
Description -
Location Contig32260: 85599-88779
Sequence    

Annotation

kegg
ID rcu:RCOM_1691420
description hypothetical protein
nr
ID XP_002509940.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCQ6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34202: 84838-88771
cDNA
(Sanger)
(ID:Location)		 050_G23.ab1: 88036-88771

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032260_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001497_040 0.1073236585 - - hypothetical protein POPTR_0008s219701g, partial [Populus trichocarpa]
3 Hb_114271_010 0.1498843769 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
4 Hb_000215_230 0.1732931466 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
5 Hb_003786_010 0.1790854937 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
6 Hb_002798_080 0.1897650372 - - hypothetical protein VITISV_043745 [Vitis vinifera]
7 Hb_004208_010 0.1913661666 - - PREDICTED: uncharacterized protein LOC105914588 [Setaria italica]
8 Hb_002400_080 0.2044419942 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
9 Hb_002615_080 0.216926007 - - PREDICTED: non-specific phospholipase C2 [Jatropha curcas]
10 Hb_003126_010 0.2203330768 - - PREDICTED: oligopeptide transporter 7-like isoform X1 [Malus domestica]
11 Hb_126933_010 0.2204421211 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
12 Hb_000853_050 0.2213611684 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_001147_030 0.2222161198 - - hypothetical protein JCGZ_14809 [Jatropha curcas]
14 Hb_170401_010 0.2230559919 - - receptor serine/threonine kinase, putative [Ricinus communis]
15 Hb_001195_250 0.2259228035 - - lrr receptor protein kinase, putative [Ricinus communis]
16 Hb_004108_190 0.2292483316 - - PREDICTED: protein catecholamines up-like [Jatropha curcas]
17 Hb_006787_070 0.2307446264 - - PREDICTED: uncharacterized protein LOC104121706, partial [Nicotiana tomentosiformis]
18 Hb_000891_010 0.2339807805 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002276_030 0.2341597182 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
20 Hb_032733_020 0.2355188224 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X4 [Citrus sinensis]

Gene co-expression network

sample Hb_032260_110 Hb_032260_110 Hb_001497_040 Hb_001497_040 Hb_032260_110--Hb_001497_040 Hb_114271_010 Hb_114271_010 Hb_032260_110--Hb_114271_010 Hb_000215_230 Hb_000215_230 Hb_032260_110--Hb_000215_230 Hb_003786_010 Hb_003786_010 Hb_032260_110--Hb_003786_010 Hb_002798_080 Hb_002798_080 Hb_032260_110--Hb_002798_080 Hb_004208_010 Hb_004208_010 Hb_032260_110--Hb_004208_010 Hb_002400_080 Hb_002400_080 Hb_001497_040--Hb_002400_080 Hb_002615_080 Hb_002615_080 Hb_001497_040--Hb_002615_080 Hb_001497_040--Hb_002798_080 Hb_002276_030 Hb_002276_030 Hb_001497_040--Hb_002276_030 Hb_006827_030 Hb_006827_030 Hb_001497_040--Hb_006827_030 Hb_032733_020 Hb_032733_020 Hb_114271_010--Hb_032733_020 Hb_004108_190 Hb_004108_190 Hb_114271_010--Hb_004108_190 Hb_129420_010 Hb_129420_010 Hb_114271_010--Hb_129420_010 Hb_013420_060 Hb_013420_060 Hb_114271_010--Hb_013420_060 Hb_002005_050 Hb_002005_050 Hb_114271_010--Hb_002005_050 Hb_024066_040 Hb_024066_040 Hb_000215_230--Hb_024066_040 Hb_001195_250 Hb_001195_250 Hb_000215_230--Hb_001195_250 Hb_000574_320 Hb_000574_320 Hb_000215_230--Hb_000574_320 Hb_000215_230--Hb_003786_010 Hb_000069_500 Hb_000069_500 Hb_000215_230--Hb_000069_500 Hb_000891_010 Hb_000891_010 Hb_000215_230--Hb_000891_010 Hb_011472_050 Hb_011472_050 Hb_003786_010--Hb_011472_050 Hb_005542_010 Hb_005542_010 Hb_003786_010--Hb_005542_010 Hb_010565_030 Hb_010565_030 Hb_003786_010--Hb_010565_030 Hb_006277_080 Hb_006277_080 Hb_003786_010--Hb_006277_080 Hb_025045_010 Hb_025045_010 Hb_003786_010--Hb_025045_010 Hb_003786_010--Hb_000574_320 Hb_006787_070 Hb_006787_070 Hb_002798_080--Hb_006787_070 Hb_001345_040 Hb_001345_040 Hb_002798_080--Hb_001345_040 Hb_006588_020 Hb_006588_020 Hb_002798_080--Hb_006588_020 Hb_188075_010 Hb_188075_010 Hb_002798_080--Hb_188075_010 Hb_004312_020 Hb_004312_020 Hb_002798_080--Hb_004312_020 Hb_001942_020 Hb_001942_020 Hb_004208_010--Hb_001942_020 Hb_106070_010 Hb_106070_010 Hb_004208_010--Hb_106070_010 Hb_001421_040 Hb_001421_040 Hb_004208_010--Hb_001421_040 Hb_004208_010--Hb_003786_010 Hb_004208_010--Hb_114271_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0889126 0.120998 0.139816 0.0874173 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0666335 0.313383

CAGE analysis