Hb_032264_090

Information

Type -
Description -
Location Contig32264: 69001-69438
Sequence    

Annotation

kegg
ID pop:POPTR_0004s09200g
description POPTRDRAFT_555914; hypothetical protein
nr
ID KDP22670.1
description hypothetical protein JCGZ_02512 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JRQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02512 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34213: 67508-68077 , PASA_asmbl_34214: 68968-69572
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032264_090 0.0 - - hypothetical protein JCGZ_02512 [Jatropha curcas]
2 Hb_000008_110 0.2144833774 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Gossypium raimondii]
3 Hb_000210_090 0.2308064298 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
4 Hb_002110_240 0.2319157918 - - clathrin assembly protein, putative [Ricinus communis]
5 Hb_008173_030 0.2329562235 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
6 Hb_000638_210 0.2417625489 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
7 Hb_000672_150 0.2551930349 - - Patatin T5 precursor, putative [Ricinus communis]
8 Hb_005663_070 0.2585259028 - - dehydrin protein [Manihot esculenta]
9 Hb_009233_030 0.2586577524 - - protein binding protein, putative [Ricinus communis]
10 Hb_000418_080 0.2658223802 - - PREDICTED: uncharacterized protein LOC105124652 [Populus euphratica]
11 Hb_000343_180 0.2718119229 - - NDWp3 [Podospora anserina]
12 Hb_001511_190 0.2766741698 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
13 Hb_005545_070 0.280998325 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
14 Hb_005048_050 0.2812976229 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
15 Hb_000732_250 0.2823204724 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial-like [Populus euphratica]
16 Hb_001113_030 0.2827554185 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
17 Hb_000417_420 0.2832045605 - - PREDICTED: U-box domain-containing protein 17 [Jatropha curcas]
18 Hb_023344_080 0.2835385204 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
19 Hb_002774_140 0.2852770731 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
20 Hb_000676_270 0.2856057341 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]

Gene co-expression network

sample Hb_032264_090 Hb_032264_090 Hb_000008_110 Hb_000008_110 Hb_032264_090--Hb_000008_110 Hb_000210_090 Hb_000210_090 Hb_032264_090--Hb_000210_090 Hb_002110_240 Hb_002110_240 Hb_032264_090--Hb_002110_240 Hb_008173_030 Hb_008173_030 Hb_032264_090--Hb_008173_030 Hb_000638_210 Hb_000638_210 Hb_032264_090--Hb_000638_210 Hb_000672_150 Hb_000672_150 Hb_032264_090--Hb_000672_150 Hb_001511_190 Hb_001511_190 Hb_000008_110--Hb_001511_190 Hb_005545_070 Hb_005545_070 Hb_000008_110--Hb_005545_070 Hb_006916_200 Hb_006916_200 Hb_000008_110--Hb_006916_200 Hb_000417_420 Hb_000417_420 Hb_000008_110--Hb_000417_420 Hb_005663_070 Hb_005663_070 Hb_000008_110--Hb_005663_070 Hb_012107_010 Hb_012107_010 Hb_000008_110--Hb_012107_010 Hb_000210_090--Hb_000638_210 Hb_007379_020 Hb_007379_020 Hb_000210_090--Hb_007379_020 Hb_003078_050 Hb_003078_050 Hb_000210_090--Hb_003078_050 Hb_002026_060 Hb_002026_060 Hb_000210_090--Hb_002026_060 Hb_005656_140 Hb_005656_140 Hb_000210_090--Hb_005656_140 Hb_002205_010 Hb_002205_010 Hb_002110_240--Hb_002205_010 Hb_002110_240--Hb_008173_030 Hb_000256_130 Hb_000256_130 Hb_002110_240--Hb_000256_130 Hb_020400_040 Hb_020400_040 Hb_002110_240--Hb_020400_040 Hb_000343_180 Hb_000343_180 Hb_002110_240--Hb_000343_180 Hb_009233_030 Hb_009233_030 Hb_002110_240--Hb_009233_030 Hb_000649_240 Hb_000649_240 Hb_008173_030--Hb_000649_240 Hb_000868_100 Hb_000868_100 Hb_008173_030--Hb_000868_100 Hb_008173_030--Hb_000343_180 Hb_008173_030--Hb_002205_010 Hb_008173_030--Hb_000638_210 Hb_000638_210--Hb_005656_140 Hb_001369_570 Hb_001369_570 Hb_000638_210--Hb_001369_570 Hb_000638_210--Hb_003078_050 Hb_009838_060 Hb_009838_060 Hb_000638_210--Hb_009838_060 Hb_000634_070 Hb_000634_070 Hb_000638_210--Hb_000634_070 Hb_001959_120 Hb_001959_120 Hb_000672_150--Hb_001959_120 Hb_001113_030 Hb_001113_030 Hb_000672_150--Hb_001113_030 Hb_168707_040 Hb_168707_040 Hb_000672_150--Hb_168707_040 Hb_001472_130 Hb_001472_130 Hb_000672_150--Hb_001472_130 Hb_000671_170 Hb_000671_170 Hb_000672_150--Hb_000671_170 Hb_000672_150--Hb_008173_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.30637 65.4986 1.15161 25.1422 0.933267 1.54259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4726 16.7992 23.6842 7.36982 0

CAGE analysis