Hb_032264_110

Information

Type -
Description -
Location Contig32264: 82419-86979
Sequence    

Annotation

kegg
ID tcc:TCM_019300
description RING/FYVE/PHD zinc finger superfamily protein
nr
ID XP_012089929.1
description PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
swissprot
ID Q5I0I2
description E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2 PE=1 SV=1
trembl
ID A0A067JFQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02514 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase march2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34215: 82636-83815 , PASA_asmbl_34216: 83868-86990
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032264_110 0.0 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
2 Hb_158467_010 0.0510090221 - - transporter, putative [Ricinus communis]
3 Hb_001009_270 0.0790989377 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
4 Hb_010655_010 0.0792516381 - - Cycloartenol synthase, putative [Ricinus communis]
5 Hb_008300_010 0.0811738323 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
6 Hb_000510_320 0.082595461 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
7 Hb_000656_040 0.0851056422 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
8 Hb_032208_090 0.0867221252 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
9 Hb_101705_030 0.0875896455 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
10 Hb_000579_140 0.0882161425 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004907_080 0.0884601201 - - zinc finger protein, putative [Ricinus communis]
12 Hb_000638_250 0.0901851976 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_004126_070 0.0917090938 desease resistance Gene Name: CDC48_2 PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
14 Hb_000403_060 0.0926770451 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
15 Hb_000431_010 0.0929638201 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
16 Hb_004994_100 0.0943774182 - - acyl-CoA thioesterase, putative [Ricinus communis]
17 Hb_012799_160 0.0946470063 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
18 Hb_000671_090 0.0954086527 - - PREDICTED: melanoma-associated antigen 1 [Jatropha curcas]
19 Hb_002687_110 0.0959470723 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
20 Hb_000815_320 0.095977777 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_032264_110 Hb_032264_110 Hb_158467_010 Hb_158467_010 Hb_032264_110--Hb_158467_010 Hb_001009_270 Hb_001009_270 Hb_032264_110--Hb_001009_270 Hb_010655_010 Hb_010655_010 Hb_032264_110--Hb_010655_010 Hb_008300_010 Hb_008300_010 Hb_032264_110--Hb_008300_010 Hb_000510_320 Hb_000510_320 Hb_032264_110--Hb_000510_320 Hb_000656_040 Hb_000656_040 Hb_032264_110--Hb_000656_040 Hb_012053_070 Hb_012053_070 Hb_158467_010--Hb_012053_070 Hb_000671_090 Hb_000671_090 Hb_158467_010--Hb_000671_090 Hb_065525_020 Hb_065525_020 Hb_158467_010--Hb_065525_020 Hb_000638_250 Hb_000638_250 Hb_158467_010--Hb_000638_250 Hb_009773_020 Hb_009773_020 Hb_158467_010--Hb_009773_020 Hb_004907_080 Hb_004907_080 Hb_001009_270--Hb_004907_080 Hb_032208_090 Hb_032208_090 Hb_001009_270--Hb_032208_090 Hb_003177_030 Hb_003177_030 Hb_001009_270--Hb_003177_030 Hb_000777_040 Hb_000777_040 Hb_001009_270--Hb_000777_040 Hb_001799_210 Hb_001799_210 Hb_001009_270--Hb_001799_210 Hb_000465_160 Hb_000465_160 Hb_001009_270--Hb_000465_160 Hb_132835_010 Hb_132835_010 Hb_010655_010--Hb_132835_010 Hb_001090_040 Hb_001090_040 Hb_010655_010--Hb_001090_040 Hb_000451_010 Hb_000451_010 Hb_010655_010--Hb_000451_010 Hb_004440_090 Hb_004440_090 Hb_010655_010--Hb_004440_090 Hb_010655_010--Hb_004907_080 Hb_001140_060 Hb_001140_060 Hb_008300_010--Hb_001140_060 Hb_009486_130 Hb_009486_130 Hb_008300_010--Hb_009486_130 Hb_000431_010 Hb_000431_010 Hb_008300_010--Hb_000431_010 Hb_006117_070 Hb_006117_070 Hb_008300_010--Hb_006117_070 Hb_000479_010 Hb_000479_010 Hb_008300_010--Hb_000479_010 Hb_010174_020 Hb_010174_020 Hb_008300_010--Hb_010174_020 Hb_002105_040 Hb_002105_040 Hb_000510_320--Hb_002105_040 Hb_000175_460 Hb_000175_460 Hb_000510_320--Hb_000175_460 Hb_000086_400 Hb_000086_400 Hb_000510_320--Hb_000086_400 Hb_004738_040 Hb_004738_040 Hb_000510_320--Hb_004738_040 Hb_000876_070 Hb_000876_070 Hb_000510_320--Hb_000876_070 Hb_181288_020 Hb_181288_020 Hb_000510_320--Hb_181288_020 Hb_000329_030 Hb_000329_030 Hb_000656_040--Hb_000329_030 Hb_002774_060 Hb_002774_060 Hb_000656_040--Hb_002774_060 Hb_000656_040--Hb_032208_090 Hb_000579_140 Hb_000579_140 Hb_000656_040--Hb_000579_140 Hb_000045_090 Hb_000045_090 Hb_000656_040--Hb_000045_090 Hb_002998_060 Hb_002998_060 Hb_000656_040--Hb_002998_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.22638 2.01858 5.18457 6.36228 8.07929 7.76834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.26147 11.1531 12.8301 4.65636 2.72448

CAGE analysis