Hb_032264_120

Information

Type -
Description -
Location Contig32264: 87898-92213
Sequence    

Annotation

kegg
ID cic:CICLE_v10013128mg
description hypothetical protein
nr
ID XP_006430680.1
description hypothetical protein CICLE_v10013128mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID A0A067FAM4
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033401mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34216: 83868-86990 , PASA_asmbl_34217: 87901-91858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032264_120 0.0 - - hypothetical protein CICLE_v10013128mg [Citrus clementina]
2 Hb_001328_040 0.0720527988 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
3 Hb_000982_090 0.0983536571 - - PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]
4 Hb_006570_140 0.1006467657 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
5 Hb_002811_260 0.1007494016 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
6 Hb_004800_230 0.1010506696 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
7 Hb_007477_070 0.1039209643 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
8 Hb_008686_080 0.1042347377 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
9 Hb_000331_250 0.1073097831 - - PREDICTED: mitochondrial pyruvate carrier 1 [Vitis vinifera]
10 Hb_001221_320 0.1079826296 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
11 Hb_000329_030 0.1079961243 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
12 Hb_000815_320 0.1088191177 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
13 Hb_008847_040 0.1090464414 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004070_020 0.1096274363 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
15 Hb_001662_070 0.1107683265 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
16 Hb_007875_030 0.1120017932 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
17 Hb_001184_090 0.1124433106 - - PREDICTED: TIP41-like protein [Jatropha curcas]
18 Hb_005773_060 0.1128838591 - - defender against cell death, putative [Ricinus communis]
19 Hb_001195_480 0.1132306857 - - cop9 complex subunit, putative [Ricinus communis]
20 Hb_032808_010 0.1138028982 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]

Gene co-expression network

sample Hb_032264_120 Hb_032264_120 Hb_001328_040 Hb_001328_040 Hb_032264_120--Hb_001328_040 Hb_000982_090 Hb_000982_090 Hb_032264_120--Hb_000982_090 Hb_006570_140 Hb_006570_140 Hb_032264_120--Hb_006570_140 Hb_002811_260 Hb_002811_260 Hb_032264_120--Hb_002811_260 Hb_004800_230 Hb_004800_230 Hb_032264_120--Hb_004800_230 Hb_007477_070 Hb_007477_070 Hb_032264_120--Hb_007477_070 Hb_001662_070 Hb_001662_070 Hb_001328_040--Hb_001662_070 Hb_000815_320 Hb_000815_320 Hb_001328_040--Hb_000815_320 Hb_001328_040--Hb_002811_260 Hb_008847_040 Hb_008847_040 Hb_001328_040--Hb_008847_040 Hb_165132_010 Hb_165132_010 Hb_001328_040--Hb_165132_010 Hb_172426_040 Hb_172426_040 Hb_000982_090--Hb_172426_040 Hb_001140_370 Hb_001140_370 Hb_000982_090--Hb_001140_370 Hb_001124_090 Hb_001124_090 Hb_000982_090--Hb_001124_090 Hb_006059_050 Hb_006059_050 Hb_000982_090--Hb_006059_050 Hb_001016_030 Hb_001016_030 Hb_000982_090--Hb_001016_030 Hb_009051_030 Hb_009051_030 Hb_000982_090--Hb_009051_030 Hb_001922_170 Hb_001922_170 Hb_006570_140--Hb_001922_170 Hb_000035_500 Hb_000035_500 Hb_006570_140--Hb_000035_500 Hb_000094_330 Hb_000094_330 Hb_006570_140--Hb_000094_330 Hb_005847_060 Hb_005847_060 Hb_006570_140--Hb_005847_060 Hb_001662_150 Hb_001662_150 Hb_006570_140--Hb_001662_150 Hb_000731_160 Hb_000731_160 Hb_006570_140--Hb_000731_160 Hb_021419_020 Hb_021419_020 Hb_002811_260--Hb_021419_020 Hb_128048_010 Hb_128048_010 Hb_002811_260--Hb_128048_010 Hb_005773_060 Hb_005773_060 Hb_002811_260--Hb_005773_060 Hb_001195_480 Hb_001195_480 Hb_002811_260--Hb_001195_480 Hb_005045_060 Hb_005045_060 Hb_002811_260--Hb_005045_060 Hb_000329_030 Hb_000329_030 Hb_004800_230--Hb_000329_030 Hb_024071_020 Hb_024071_020 Hb_004800_230--Hb_024071_020 Hb_000163_160 Hb_000163_160 Hb_004800_230--Hb_000163_160 Hb_003126_050 Hb_003126_050 Hb_004800_230--Hb_003126_050 Hb_000494_020 Hb_000494_020 Hb_004800_230--Hb_000494_020 Hb_001184_090 Hb_001184_090 Hb_004800_230--Hb_001184_090 Hb_001534_120 Hb_001534_120 Hb_007477_070--Hb_001534_120 Hb_025645_010 Hb_025645_010 Hb_007477_070--Hb_025645_010 Hb_001512_060 Hb_001512_060 Hb_007477_070--Hb_001512_060 Hb_007477_070--Hb_001662_070 Hb_000771_120 Hb_000771_120 Hb_007477_070--Hb_000771_120 Hb_007576_040 Hb_007576_040 Hb_007477_070--Hb_007576_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
81.3705 11.2483 59.6384 56.8345 47.3273 61.42
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.2194 88.3233 47.8381 52.6823 19.6485

CAGE analysis