Hb_032278_030

Information

Type -
Description -
Location Contig32278: 35391-44389
Sequence    

Annotation

kegg
ID rcu:RCOM_1667720
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002514493.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID Q0JAA0
description Probable protein phosphatase 2C 44 OS=Oryza sativa subsp. japonica GN=Os04g0609600 PE=2 SV=1
trembl
ID B9RL74
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_1667720 PE=4 SV=1
Gene Ontology
ID GO:0009536
description probable protein phosphatase 2c 44

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34225: 35397-43878
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032278_030 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_008770_030 0.0889029745 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
3 Hb_000230_390 0.0893013358 - - PREDICTED: F-box/kelch-repeat protein At3g23880 [Jatropha curcas]
4 Hb_003373_030 0.0893816147 - - PREDICTED: serine/threonine-protein kinase ATG1 [Jatropha curcas]
5 Hb_007508_090 0.100630848 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
6 Hb_004143_040 0.1008110879 - - argininosuccinate lyase, putative [Ricinus communis]
7 Hb_000866_170 0.1041528912 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_001205_240 0.1082852582 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
9 Hb_004453_050 0.1094638069 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
10 Hb_000710_060 0.1095421802 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
11 Hb_002450_020 0.1101224863 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
12 Hb_000840_250 0.1108057175 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
13 Hb_000189_560 0.1120268337 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
14 Hb_004117_310 0.1129627039 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
15 Hb_003761_010 0.1130799417 - - alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_000173_490 0.1130983993 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
17 Hb_000614_250 0.1133428632 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
18 Hb_000185_030 0.113430442 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
19 Hb_001856_230 0.1141104229 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
20 Hb_002675_070 0.1142408657 - - PREDICTED: protein CASC3 [Jatropha curcas]

Gene co-expression network

sample Hb_032278_030 Hb_032278_030 Hb_008770_030 Hb_008770_030 Hb_032278_030--Hb_008770_030 Hb_000230_390 Hb_000230_390 Hb_032278_030--Hb_000230_390 Hb_003373_030 Hb_003373_030 Hb_032278_030--Hb_003373_030 Hb_007508_090 Hb_007508_090 Hb_032278_030--Hb_007508_090 Hb_004143_040 Hb_004143_040 Hb_032278_030--Hb_004143_040 Hb_000866_170 Hb_000866_170 Hb_032278_030--Hb_000866_170 Hb_000710_060 Hb_000710_060 Hb_008770_030--Hb_000710_060 Hb_015807_150 Hb_015807_150 Hb_008770_030--Hb_015807_150 Hb_000297_010 Hb_000297_010 Hb_008770_030--Hb_000297_010 Hb_033772_030 Hb_033772_030 Hb_008770_030--Hb_033772_030 Hb_019863_070 Hb_019863_070 Hb_008770_030--Hb_019863_070 Hb_000185_030 Hb_000185_030 Hb_008770_030--Hb_000185_030 Hb_000230_390--Hb_007508_090 Hb_000840_250 Hb_000840_250 Hb_000230_390--Hb_000840_250 Hb_001159_110 Hb_001159_110 Hb_000230_390--Hb_001159_110 Hb_007532_030 Hb_007532_030 Hb_000230_390--Hb_007532_030 Hb_001014_030 Hb_001014_030 Hb_000230_390--Hb_001014_030 Hb_003371_090 Hb_003371_090 Hb_000230_390--Hb_003371_090 Hb_003373_030--Hb_004143_040 Hb_003373_030--Hb_008770_030 Hb_003373_030--Hb_000866_170 Hb_003373_030--Hb_015807_150 Hb_000890_210 Hb_000890_210 Hb_003373_030--Hb_000890_210 Hb_007508_090--Hb_003371_090 Hb_007508_090--Hb_007532_030 Hb_007508_090--Hb_000710_060 Hb_000189_560 Hb_000189_560 Hb_007508_090--Hb_000189_560 Hb_000213_100 Hb_000213_100 Hb_007508_090--Hb_000213_100 Hb_000023_280 Hb_000023_280 Hb_004143_040--Hb_000023_280 Hb_000116_410 Hb_000116_410 Hb_004143_040--Hb_000116_410 Hb_002662_020 Hb_002662_020 Hb_004143_040--Hb_002662_020 Hb_003761_010 Hb_003761_010 Hb_004143_040--Hb_003761_010 Hb_001205_240 Hb_001205_240 Hb_004143_040--Hb_001205_240 Hb_000245_040 Hb_000245_040 Hb_000866_170--Hb_000245_040 Hb_000866_170--Hb_000297_010 Hb_000395_190 Hb_000395_190 Hb_000866_170--Hb_000395_190 Hb_000866_170--Hb_000890_210 Hb_004724_150 Hb_004724_150 Hb_000866_170--Hb_004724_150 Hb_001341_170 Hb_001341_170 Hb_000866_170--Hb_001341_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7405 52.5283 12.9927 28.3603 13.4957 43.4021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.1127 33.7183 40.3265 34.5585 20.0334

CAGE analysis