Hb_032299_030

Information

Type transcription factor
Description TF Family: MYB
Location Contig32299: 17252-18203
Sequence    

Annotation

kegg
ID rcu:RCOM_0788410
description r2r3-myb transcription factor, putative
nr
ID XP_012064973.1
description PREDICTED: transcription factor MYB59 isoform X1 [Jatropha curcas]
swissprot
ID Q9LX82
description Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1
trembl
ID A0A067L6V8
description MYB family protein OS=Jatropha curcas GN=JCGZ_05658 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb59 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032299_030 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB59 isoform X1 [Jatropha curcas]
2 Hb_089032_060 0.0253790014 - - Uncharacterized protein TCM_027342 [Theobroma cacao]
3 Hb_113388_010 0.1034803625 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000395_160 0.1105608557 - - hypothetical protein POPTR_0006s25490g [Populus trichocarpa]
5 Hb_000380_070 0.115205804 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000004_150 0.1176183277 - - hypothetical protein RCOM_1382630 [Ricinus communis]
7 Hb_000007_170 0.1176183277 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Nelumbo nucifera]
8 Hb_000010_280 0.1176183277 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
9 Hb_000022_220 0.1176183277 - - PREDICTED: potassium channel KAT3 [Jatropha curcas]
10 Hb_000045_120 0.1176183277 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
11 Hb_000056_320 0.1176183277 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
12 Hb_000066_110 0.1176183277 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01370 [Jatropha curcas]
13 Hb_000072_270 0.1176183277 - - JHL22C18.10 [Jatropha curcas]
14 Hb_000078_110 0.1176183277 - - PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]
15 Hb_000081_190 0.1176183277 - - -
16 Hb_000082_030 0.1176183277 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105164525 [Sesamum indicum]
17 Hb_000085_430 0.1176183277 - - -
18 Hb_000092_110 0.1176183277 - - catalytic, putative [Ricinus communis]
19 Hb_000093_120 0.1176183277 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_000120_110 0.1176183277 - - 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase, putative [Ricinus communis]

Gene co-expression network

sample Hb_032299_030 Hb_032299_030 Hb_089032_060 Hb_089032_060 Hb_032299_030--Hb_089032_060 Hb_113388_010 Hb_113388_010 Hb_032299_030--Hb_113388_010 Hb_000395_160 Hb_000395_160 Hb_032299_030--Hb_000395_160 Hb_000380_070 Hb_000380_070 Hb_032299_030--Hb_000380_070 Hb_000004_150 Hb_000004_150 Hb_032299_030--Hb_000004_150 Hb_000007_170 Hb_000007_170 Hb_032299_030--Hb_000007_170 Hb_089032_060--Hb_113388_010 Hb_089032_060--Hb_000380_070 Hb_089032_060--Hb_000395_160 Hb_089032_060--Hb_000004_150 Hb_089032_060--Hb_000007_170 Hb_113388_010--Hb_000380_070 Hb_007292_030 Hb_007292_030 Hb_113388_010--Hb_007292_030 Hb_004352_020 Hb_004352_020 Hb_113388_010--Hb_004352_020 Hb_003849_230 Hb_003849_230 Hb_113388_010--Hb_003849_230 Hb_000979_270 Hb_000979_270 Hb_000395_160--Hb_000979_270 Hb_005687_020 Hb_005687_020 Hb_000395_160--Hb_005687_020 Hb_000395_160--Hb_000004_150 Hb_000395_160--Hb_000007_170 Hb_000010_280 Hb_000010_280 Hb_000395_160--Hb_000010_280 Hb_000022_220 Hb_000022_220 Hb_000395_160--Hb_000022_220 Hb_000380_070--Hb_004352_020 Hb_172864_010 Hb_172864_010 Hb_000380_070--Hb_172864_010 Hb_000380_070--Hb_000395_160 Hb_000004_150--Hb_000007_170 Hb_000004_150--Hb_000010_280 Hb_000004_150--Hb_000022_220 Hb_000045_120 Hb_000045_120 Hb_000004_150--Hb_000045_120 Hb_000056_320 Hb_000056_320 Hb_000004_150--Hb_000056_320 Hb_000066_110 Hb_000066_110 Hb_000004_150--Hb_000066_110 Hb_000004_150--Hb_000007_170 Hb_000004_150--Hb_000010_280 Hb_000004_150--Hb_000022_220 Hb_000004_150--Hb_000045_120 Hb_000004_150--Hb_000056_320 Hb_000004_150--Hb_000066_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.46741 0 0 0 0.04133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis