Hb_032458_010

Information

Type -
Description -
Location Contig32458: 412-1056
Sequence    

Annotation

kegg
ID pop:POPTR_0006s04750g
description POPTRDRAFT_560484; GTP-binding family protein
nr
ID KDP26074.1
description hypothetical protein JCGZ_21107 [Jatropha curcas]
swissprot
ID Q8L607
description Short integuments 2, mitochondrial OS=Arabidopsis thaliana GN=SIN2 PE=1 SV=1
trembl
ID A0A067K2P9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21107 PE=4 SV=1
Gene Ontology
ID GO:0009507
description mitochondrial ribosome-associated gtpase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34251: 889-1068
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032458_010 0.0 - - hypothetical protein JCGZ_21107 [Jatropha curcas]
2 Hb_004619_050 0.0598621013 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X2 [Jatropha curcas]
3 Hb_005608_030 0.0869606572 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
4 Hb_000429_120 0.0880755536 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
5 Hb_001866_110 0.0919986511 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
6 Hb_000889_020 0.0927231637 - - ribosome biogenesis protein brix, putative [Ricinus communis]
7 Hb_009117_030 0.0967942505 - - PREDICTED: histidine protein methyltransferase 1 homolog isoform X2 [Jatropha curcas]
8 Hb_004447_060 0.0968141114 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
9 Hb_000820_170 0.0999581639 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
10 Hb_005883_050 0.1002645312 - - PREDICTED: transportin-3 [Jatropha curcas]
11 Hb_000166_110 0.1011307993 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
12 Hb_002084_020 0.1015203833 - - hypothetical protein JCGZ_04066 [Jatropha curcas]
13 Hb_006663_070 0.1030947583 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]
14 Hb_000679_150 0.1033104764 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X2 [Fragaria vesca subsp. vesca]
15 Hb_154745_010 0.1034016615 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
16 Hb_002027_270 0.1042301594 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
17 Hb_001266_080 0.1049458805 - - PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Jatropha curcas]
18 Hb_011689_020 0.1052143178 - - protein phosphatase 2c, putative [Ricinus communis]
19 Hb_011318_010 0.1062643696 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]
20 Hb_007805_010 0.1072357972 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_032458_010 Hb_032458_010 Hb_004619_050 Hb_004619_050 Hb_032458_010--Hb_004619_050 Hb_005608_030 Hb_005608_030 Hb_032458_010--Hb_005608_030 Hb_000429_120 Hb_000429_120 Hb_032458_010--Hb_000429_120 Hb_001866_110 Hb_001866_110 Hb_032458_010--Hb_001866_110 Hb_000889_020 Hb_000889_020 Hb_032458_010--Hb_000889_020 Hb_009117_030 Hb_009117_030 Hb_032458_010--Hb_009117_030 Hb_004447_060 Hb_004447_060 Hb_004619_050--Hb_004447_060 Hb_002027_270 Hb_002027_270 Hb_004619_050--Hb_002027_270 Hb_025012_010 Hb_025012_010 Hb_004619_050--Hb_025012_010 Hb_003428_070 Hb_003428_070 Hb_004619_050--Hb_003428_070 Hb_004619_050--Hb_000429_120 Hb_000679_150 Hb_000679_150 Hb_005608_030--Hb_000679_150 Hb_005608_030--Hb_004619_050 Hb_000364_080 Hb_000364_080 Hb_005608_030--Hb_000364_080 Hb_020000_020 Hb_020000_020 Hb_005608_030--Hb_020000_020 Hb_006663_070 Hb_006663_070 Hb_005608_030--Hb_006663_070 Hb_000429_120--Hb_001866_110 Hb_000429_120--Hb_002027_270 Hb_000046_440 Hb_000046_440 Hb_000429_120--Hb_000046_440 Hb_016898_010 Hb_016898_010 Hb_000429_120--Hb_016898_010 Hb_028487_110 Hb_028487_110 Hb_000429_120--Hb_028487_110 Hb_005977_090 Hb_005977_090 Hb_001866_110--Hb_005977_090 Hb_000179_020 Hb_000179_020 Hb_001866_110--Hb_000179_020 Hb_002174_060 Hb_002174_060 Hb_001866_110--Hb_002174_060 Hb_001866_110--Hb_003428_070 Hb_001866_110--Hb_000889_020 Hb_000373_240 Hb_000373_240 Hb_000889_020--Hb_000373_240 Hb_000166_110 Hb_000166_110 Hb_000889_020--Hb_000166_110 Hb_007218_080 Hb_007218_080 Hb_000889_020--Hb_007218_080 Hb_011794_060 Hb_011794_060 Hb_000889_020--Hb_011794_060 Hb_000889_020--Hb_000179_020 Hb_006692_030 Hb_006692_030 Hb_000889_020--Hb_006692_030 Hb_005016_050 Hb_005016_050 Hb_009117_030--Hb_005016_050 Hb_001266_080 Hb_001266_080 Hb_009117_030--Hb_001266_080 Hb_009117_030--Hb_000889_020 Hb_003333_060 Hb_003333_060 Hb_009117_030--Hb_003333_060 Hb_009117_030--Hb_000166_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.19745 4.77583 2.71506 3.82719 6.9642 19.9884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.85827 6.68681 7.42361 6.17411 7.23938

CAGE analysis