Hb_032496_030

Information

Type -
Description -
Location Contig32496: 60580-62532
Sequence    

Annotation

kegg
ID pop:POPTR_0001s25230g
description POPTRDRAFT_815327; myosin heavy chain-related family protein
nr
ID XP_012066953.1
description PREDICTED: WEB family protein At3g02930, chloroplastic [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LCK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34255: 61270-62368
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032496_030 0.0 - - PREDICTED: WEB family protein At3g02930, chloroplastic [Jatropha curcas]
2 Hb_012132_040 0.0947823061 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
3 Hb_041392_010 0.1144327527 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
4 Hb_004241_040 0.1193849719 - - -
5 Hb_001341_050 0.1241851666 - - ATP synthase D chain, mitochondrial [Theobroma cacao]
6 Hb_005054_070 0.1278997056 - - unnamed protein product [Vitis vinifera]
7 Hb_005784_080 0.129103672 - - kinase, putative [Ricinus communis]
8 Hb_002235_150 0.1337751142 - - -
9 Hb_004198_010 0.133846424 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
10 Hb_007668_040 0.13590231 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
11 Hb_003581_020 0.1361824832 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
12 Hb_033312_140 0.136834775 - - RNA and export factor-binding family protein [Populus trichocarpa]
13 Hb_000364_060 0.1382396954 - - JHL03K20.4 [Jatropha curcas]
14 Hb_000156_140 0.1419128402 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
15 Hb_002774_070 0.1431988805 - - hypothetical protein EUGRSUZ_F00307 [Eucalyptus grandis]
16 Hb_005368_010 0.1435002824 - - PREDICTED: umecyanin-like [Jatropha curcas]
17 Hb_000209_090 0.1438799362 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
18 Hb_175612_010 0.143910652 transcription factor TF Family: MBF1 orf [Ricinus communis]
19 Hb_000199_080 0.1466587147 - - conserved hypothetical protein [Ricinus communis]
20 Hb_033642_020 0.1483863046 - - hypothetical protein JCGZ_19094 [Jatropha curcas]

Gene co-expression network

sample Hb_032496_030 Hb_032496_030 Hb_012132_040 Hb_012132_040 Hb_032496_030--Hb_012132_040 Hb_041392_010 Hb_041392_010 Hb_032496_030--Hb_041392_010 Hb_004241_040 Hb_004241_040 Hb_032496_030--Hb_004241_040 Hb_001341_050 Hb_001341_050 Hb_032496_030--Hb_001341_050 Hb_005054_070 Hb_005054_070 Hb_032496_030--Hb_005054_070 Hb_005784_080 Hb_005784_080 Hb_032496_030--Hb_005784_080 Hb_007668_040 Hb_007668_040 Hb_012132_040--Hb_007668_040 Hb_012132_040--Hb_001341_050 Hb_000364_060 Hb_000364_060 Hb_012132_040--Hb_000364_060 Hb_002942_080 Hb_002942_080 Hb_012132_040--Hb_002942_080 Hb_003581_020 Hb_003581_020 Hb_012132_040--Hb_003581_020 Hb_033312_140 Hb_033312_140 Hb_041392_010--Hb_033312_140 Hb_003656_140 Hb_003656_140 Hb_041392_010--Hb_003656_140 Hb_023001_050 Hb_023001_050 Hb_041392_010--Hb_023001_050 Hb_000606_080 Hb_000606_080 Hb_041392_010--Hb_000606_080 Hb_150204_010 Hb_150204_010 Hb_041392_010--Hb_150204_010 Hb_150360_010 Hb_150360_010 Hb_041392_010--Hb_150360_010 Hb_073367_010 Hb_073367_010 Hb_004241_040--Hb_073367_010 Hb_000622_100 Hb_000622_100 Hb_004241_040--Hb_000622_100 Hb_025236_040 Hb_025236_040 Hb_004241_040--Hb_025236_040 Hb_004241_040--Hb_005054_070 Hb_004662_010 Hb_004662_010 Hb_004241_040--Hb_004662_010 Hb_001341_050--Hb_007668_040 Hb_001341_050--Hb_000364_060 Hb_001341_050--Hb_002942_080 Hb_004198_010 Hb_004198_010 Hb_001341_050--Hb_004198_010 Hb_003434_060 Hb_003434_060 Hb_001341_050--Hb_003434_060 Hb_010423_020 Hb_010423_020 Hb_001341_050--Hb_010423_020 Hb_000176_120 Hb_000176_120 Hb_005054_070--Hb_000176_120 Hb_136731_010 Hb_136731_010 Hb_005054_070--Hb_136731_010 Hb_000001_040 Hb_000001_040 Hb_005054_070--Hb_000001_040 Hb_144898_010 Hb_144898_010 Hb_005054_070--Hb_144898_010 Hb_005784_080--Hb_001341_050 Hb_000176_110 Hb_000176_110 Hb_005784_080--Hb_000176_110 Hb_003352_050 Hb_003352_050 Hb_005784_080--Hb_003352_050 Hb_033642_020 Hb_033642_020 Hb_005784_080--Hb_033642_020 Hb_000997_020 Hb_000997_020 Hb_005784_080--Hb_000997_020 Hb_000172_120 Hb_000172_120 Hb_005784_080--Hb_000172_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.48184 0.772975 3.51638 3.76295 8.92736 17.5652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.97476 5.78652 2.05444 2.82032 1.21254

CAGE analysis