Hb_032621_010

Information

Type -
Description -
Location Contig32621: 1406-1746
Sequence    

Annotation

kegg
ID pvu:PHAVU_006G197300g
description hypothetical protein
nr
ID XP_007148305.1
description hypothetical protein PHAVU_006G197300g [Phaseolus vulgaris]
swissprot
ID P07053
description Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1
trembl
ID V7BQR0
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G197300g PE=4 SV=1
Gene Ontology
ID GO:0010033
description pathogenesis-related protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34318: 1200-1856
cDNA
(Sanger)
(ID:Location)		 007_P02.ab1: 1235-1853 , 019_L19.ab1: 1234-1851 , 035_M20.ab1: 1235-1856 , 043_M23.ab1: 1235-1856 , 044_K14.ab1: 1235-1855

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032621_010 0.0 - - hypothetical protein PHAVU_006G197300g [Phaseolus vulgaris]
2 Hb_026650_010 0.0372330703 - - nitrate transporter, putative [Ricinus communis]
3 Hb_003166_020 0.0716296966 - - PREDICTED: RNA-binding E3 ubiquitin-protein ligase MEX3C-like [Jatropha curcas]
4 Hb_069151_010 0.1150713878 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Gossypium raimondii]
5 Hb_000800_060 0.1186133197 - - hypothetical protein POPTR_0008s02870g [Populus trichocarpa]
6 Hb_003392_030 0.1203493309 - - conserved hypothetical protein [Ricinus communis]
7 Hb_090510_010 0.1217471507 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
8 Hb_000668_070 0.1234081157 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000917_330 0.1268764875 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
10 Hb_005396_010 0.1322983661 - - PREDICTED: interleukin enhancer-binding factor 3-B-like [Jatropha curcas]
11 Hb_178252_010 0.1336083836 - - hypothetical protein POPTR_0018s01890g [Populus trichocarpa]
12 Hb_002809_020 0.1386305073 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
13 Hb_124625_010 0.1398818929 - - hypothetical protein JCGZ_01142 [Jatropha curcas]
14 Hb_000625_130 0.1414035176 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
15 Hb_055154_010 0.1449500001 - - PREDICTED: laccase-7 [Jatropha curcas]
16 Hb_007017_120 0.1456550401 - - PREDICTED: exocyst complex component EXO84A [Jatropha curcas]
17 Hb_001936_030 0.1464363936 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
18 Hb_002218_040 0.1524273559 - - conserved hypothetical protein [Ricinus communis]
19 Hb_027242_010 0.1525236562 - - PREDICTED: pathogenesis-related protein 1-like [Populus euphratica]
20 Hb_050898_020 0.1543492197 - - hypothetical protein JCGZ_19965 [Jatropha curcas]

Gene co-expression network

sample Hb_032621_010 Hb_032621_010 Hb_026650_010 Hb_026650_010 Hb_032621_010--Hb_026650_010 Hb_003166_020 Hb_003166_020 Hb_032621_010--Hb_003166_020 Hb_069151_010 Hb_069151_010 Hb_032621_010--Hb_069151_010 Hb_000800_060 Hb_000800_060 Hb_032621_010--Hb_000800_060 Hb_003392_030 Hb_003392_030 Hb_032621_010--Hb_003392_030 Hb_090510_010 Hb_090510_010 Hb_032621_010--Hb_090510_010 Hb_026650_010--Hb_003392_030 Hb_026650_010--Hb_003166_020 Hb_026650_010--Hb_000800_060 Hb_000668_070 Hb_000668_070 Hb_026650_010--Hb_000668_070 Hb_000917_330 Hb_000917_330 Hb_026650_010--Hb_000917_330 Hb_003166_020--Hb_000917_330 Hb_003166_020--Hb_000800_060 Hb_003166_020--Hb_000668_070 Hb_003166_020--Hb_069151_010 Hb_069151_010--Hb_000668_070 Hb_069151_010--Hb_000800_060 Hb_069151_010--Hb_090510_010 Hb_055154_010 Hb_055154_010 Hb_069151_010--Hb_055154_010 Hb_140049_060 Hb_140049_060 Hb_069151_010--Hb_140049_060 Hb_000800_060--Hb_090510_010 Hb_005396_010 Hb_005396_010 Hb_000800_060--Hb_005396_010 Hb_124625_010 Hb_124625_010 Hb_000800_060--Hb_124625_010 Hb_000800_060--Hb_000668_070 Hb_050898_020 Hb_050898_020 Hb_000800_060--Hb_050898_020 Hb_035583_010 Hb_035583_010 Hb_003392_030--Hb_035583_010 Hb_001936_030 Hb_001936_030 Hb_003392_030--Hb_001936_030 Hb_003392_030--Hb_003166_020 Hb_003392_030--Hb_050898_020 Hb_090510_010--Hb_005396_010 Hb_090510_010--Hb_124625_010 Hb_090510_010--Hb_055154_010 Hb_090510_010--Hb_000668_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 13.1148 9.89403 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.584626 52.2525 1.25576

CAGE analysis