Hb_032631_060

Information

Type -
Description -
Location Contig32631: 41545-43785
Sequence    

Annotation

kegg
ID rcu:RCOM_0468740
description Myosin heavy chain, putative
nr
ID XP_002528078.1
description Myosin heavy chain, putative [Ricinus communis]
swissprot
ID Q9C9N6
description Protein PLASTID MOVEMENT IMPAIRED 2 OS=Arabidopsis thaliana GN=PMI2 PE=1 SV=1
trembl
ID B9SQ09
description Myosin heavy chain, putative OS=Ricinus communis GN=RCOM_0468740 PE=4 SV=1
Gene Ontology
ID GO:0007165
description protein plastid movement impaired 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34331: 43425-43706
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032631_060 0.0 - - Myosin heavy chain, putative [Ricinus communis]
2 Hb_001104_080 0.0396429324 - - peroxiredoxin, putative [Ricinus communis]
3 Hb_000010_380 0.0488152334 - - hypothetical protein CICLE_v10020897mg [Citrus clementina]
4 Hb_004116_030 0.0515963139 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
5 Hb_000805_080 0.0524251532 - - PREDICTED: abscisic acid 8'-hydroxylase 2 isoform X2 [Jatropha curcas]
6 Hb_000923_030 0.0526106395 - - F-box family protein [Populus trichocarpa]
7 Hb_003653_030 0.0553014894 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_001038_020 0.0574264124 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
9 Hb_000825_010 0.0602057757 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
10 Hb_001287_070 0.0645942451 - - latex plastidic aldolase-like protein [Hevea brasiliensis]
11 Hb_004631_020 0.0666917321 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
12 Hb_008725_280 0.06712543 transcription factor TF Family: MYB hypothetical protein POPTR_0002s19920g [Populus trichocarpa]
13 Hb_003090_050 0.06814504 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
14 Hb_000762_050 0.0692725502 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
15 Hb_000245_090 0.0694942632 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
16 Hb_009663_030 0.0704479565 - - Blue copper protein precursor, putative [Ricinus communis]
17 Hb_003337_080 0.070515191 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
18 Hb_011068_010 0.070861295 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
19 Hb_016334_010 0.0709887497 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
20 Hb_001046_060 0.0710594391 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_032631_060 Hb_032631_060 Hb_001104_080 Hb_001104_080 Hb_032631_060--Hb_001104_080 Hb_000010_380 Hb_000010_380 Hb_032631_060--Hb_000010_380 Hb_004116_030 Hb_004116_030 Hb_032631_060--Hb_004116_030 Hb_000805_080 Hb_000805_080 Hb_032631_060--Hb_000805_080 Hb_000923_030 Hb_000923_030 Hb_032631_060--Hb_000923_030 Hb_003653_030 Hb_003653_030 Hb_032631_060--Hb_003653_030 Hb_000825_010 Hb_000825_010 Hb_001104_080--Hb_000825_010 Hb_001104_080--Hb_000923_030 Hb_001104_080--Hb_000805_080 Hb_007559_020 Hb_007559_020 Hb_001104_080--Hb_007559_020 Hb_001104_080--Hb_000010_380 Hb_000010_380--Hb_000805_080 Hb_001046_060 Hb_001046_060 Hb_000010_380--Hb_001046_060 Hb_001287_070 Hb_001287_070 Hb_000010_380--Hb_001287_070 Hb_011068_010 Hb_011068_010 Hb_000010_380--Hb_011068_010 Hb_003337_080 Hb_003337_080 Hb_000010_380--Hb_003337_080 Hb_000762_050 Hb_000762_050 Hb_004116_030--Hb_000762_050 Hb_000003_530 Hb_000003_530 Hb_004116_030--Hb_000003_530 Hb_016334_010 Hb_016334_010 Hb_004116_030--Hb_016334_010 Hb_002161_010 Hb_002161_010 Hb_004116_030--Hb_002161_010 Hb_008725_280 Hb_008725_280 Hb_004116_030--Hb_008725_280 Hb_004116_030--Hb_003653_030 Hb_000805_080--Hb_001046_060 Hb_000805_080--Hb_003337_080 Hb_000805_080--Hb_011068_010 Hb_005605_020 Hb_005605_020 Hb_000805_080--Hb_005605_020 Hb_000805_080--Hb_001287_070 Hb_003090_050 Hb_003090_050 Hb_000923_030--Hb_003090_050 Hb_000923_030--Hb_000825_010 Hb_000923_030--Hb_001287_070 Hb_000923_030--Hb_000805_080 Hb_008748_050 Hb_008748_050 Hb_000923_030--Hb_008748_050 Hb_003653_030--Hb_000762_050 Hb_001038_020 Hb_001038_020 Hb_003653_030--Hb_001038_020 Hb_003653_030--Hb_001104_080 Hb_003653_030--Hb_000003_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.116632 6.95143 1.60675 0.00930716 0.00813162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.021116 0.0664603 0 0.0396394 23.4961

CAGE analysis