Hb_032660_020

Information

Type -
Description -
Location Contig32660: 32439-33584
Sequence    

Annotation

kegg
ID rcu:RCOM_1606770
description hypothetical protein
nr
ID XP_012080579.1
description PREDICTED: F-box protein At5g49610-like [Jatropha curcas]
swissprot
ID Q9FGY4
description F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1
trembl
ID A0A067LM01
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17412 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032660_020 0.0 - - PREDICTED: F-box protein At5g49610-like [Jatropha curcas]
2 Hb_000387_060 0.140305122 - - -
3 Hb_000714_010 0.1606394896 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
4 Hb_003592_070 0.1709504292 - - -
5 Hb_001101_010 0.1742010371 - - hypothetical protein POPTR_0004s18730g [Populus trichocarpa]
6 Hb_002918_300 0.1757125109 - - -
7 Hb_003050_070 0.1800116909 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002431_060 0.1909907144 - - -
9 Hb_003777_230 0.191001471 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
10 Hb_001425_110 0.1922650323 - - hypothetical protein Csa_6G106200 [Cucumis sativus]
11 Hb_007741_040 0.1924714809 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105643153 [Jatropha curcas]
12 Hb_000329_660 0.1957820221 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
13 Hb_003211_050 0.19841606 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
14 Hb_028285_030 0.2001605965 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
15 Hb_000567_280 0.2083187934 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
16 Hb_000501_020 0.2094551525 - - PREDICTED: uncharacterized protein LOC100250168 [Vitis vinifera]
17 Hb_003376_210 0.2095657604 - - -
18 Hb_001959_260 0.210303181 - - -
19 Hb_000861_050 0.2156168625 - - PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]
20 Hb_000792_120 0.2172839698 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_032660_020 Hb_032660_020 Hb_000387_060 Hb_000387_060 Hb_032660_020--Hb_000387_060 Hb_000714_010 Hb_000714_010 Hb_032660_020--Hb_000714_010 Hb_003592_070 Hb_003592_070 Hb_032660_020--Hb_003592_070 Hb_001101_010 Hb_001101_010 Hb_032660_020--Hb_001101_010 Hb_002918_300 Hb_002918_300 Hb_032660_020--Hb_002918_300 Hb_003050_070 Hb_003050_070 Hb_032660_020--Hb_003050_070 Hb_003211_050 Hb_003211_050 Hb_000387_060--Hb_003211_050 Hb_000329_660 Hb_000329_660 Hb_000387_060--Hb_000329_660 Hb_000387_060--Hb_000714_010 Hb_001425_110 Hb_001425_110 Hb_000387_060--Hb_001425_110 Hb_000792_120 Hb_000792_120 Hb_000387_060--Hb_000792_120 Hb_000714_010--Hb_003050_070 Hb_000250_010 Hb_000250_010 Hb_000714_010--Hb_000250_010 Hb_000714_010--Hb_003211_050 Hb_010166_020 Hb_010166_020 Hb_000714_010--Hb_010166_020 Hb_003777_230 Hb_003777_230 Hb_000714_010--Hb_003777_230 Hb_149683_010 Hb_149683_010 Hb_000714_010--Hb_149683_010 Hb_000032_350 Hb_000032_350 Hb_003592_070--Hb_000032_350 Hb_003592_070--Hb_000329_660 Hb_003592_070--Hb_001101_010 Hb_004129_150 Hb_004129_150 Hb_003592_070--Hb_004129_150 Hb_003592_070--Hb_003050_070 Hb_001101_010--Hb_002918_300 Hb_001101_010--Hb_000032_350 Hb_001007_050 Hb_001007_050 Hb_001101_010--Hb_001007_050 Hb_001101_010--Hb_001425_110 Hb_010172_100 Hb_010172_100 Hb_001101_010--Hb_010172_100 Hb_002918_300--Hb_000714_010 Hb_001799_040 Hb_001799_040 Hb_002918_300--Hb_001799_040 Hb_002431_060 Hb_002431_060 Hb_002918_300--Hb_002431_060 Hb_003376_210 Hb_003376_210 Hb_002918_300--Hb_003376_210 Hb_003050_070--Hb_003211_050 Hb_000567_280 Hb_000567_280 Hb_003050_070--Hb_000567_280 Hb_104010_010 Hb_104010_010 Hb_003050_070--Hb_104010_010 Hb_003050_070--Hb_010166_020 Hb_003050_070--Hb_149683_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.206196 0.0187618 0 0 0.0878991 0.0199117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.32925 1.04558 0.187773 0.0405694 0

CAGE analysis