Hb_032717_010

Information

Type -
Description -
Location Contig32717: 38538-47891
Sequence    

Annotation

kegg
ID rcu:RCOM_0252330
description alpha-glucosidase, putative (EC:3.2.1.20)
nr
ID CBI39013.3
description unnamed protein product [Vitis vinifera]
swissprot
ID O04931
description Alpha-glucosidase OS=Beta vulgaris PE=1 SV=1
trembl
ID B9T7M3
description Alpha-glucosidase, putative OS=Ricinus communis GN=RCOM_0252330 PE=3 SV=1
Gene Ontology
ID GO:0004558
description glycosyl hydrolases family 31 protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34421: 44628-46932 , PASA_asmbl_34422: 46975-47122 , PASA_asmbl_34423: 47129-47570
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032717_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_006788_100 0.0936424342 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
3 Hb_000417_280 0.0984331709 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005523_050 0.1020028998 - - hypothetical protein JCGZ_09175 [Jatropha curcas]
5 Hb_001008_110 0.1095104782 - - -
6 Hb_001268_300 0.1169860597 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001819_010 0.1186528455 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
8 Hb_005276_220 0.1186960153 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
9 Hb_000163_250 0.119011176 - - unnamed protein product [Vitis vinifera]
10 Hb_002811_020 0.1281484737 - - Cysteine synthase [Morus notabilis]
11 Hb_023344_130 0.1287355098 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
12 Hb_011537_020 0.1299840358 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
13 Hb_001085_230 0.1318794897 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]
14 Hb_007919_030 0.1322036855 - - -
15 Hb_082683_010 0.1353827779 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
16 Hb_003842_010 0.1367828343 - - receptor protein kinase, putative [Ricinus communis]
17 Hb_001018_080 0.1380869494 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000108_090 0.1383636132 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
19 Hb_002078_240 0.1390882372 rubber biosynthesis Gene Name: SRPP4 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
20 Hb_000261_320 0.1407751942 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_032717_010 Hb_032717_010 Hb_006788_100 Hb_006788_100 Hb_032717_010--Hb_006788_100 Hb_000417_280 Hb_000417_280 Hb_032717_010--Hb_000417_280 Hb_005523_050 Hb_005523_050 Hb_032717_010--Hb_005523_050 Hb_001008_110 Hb_001008_110 Hb_032717_010--Hb_001008_110 Hb_001268_300 Hb_001268_300 Hb_032717_010--Hb_001268_300 Hb_001819_010 Hb_001819_010 Hb_032717_010--Hb_001819_010 Hb_006788_100--Hb_001819_010 Hb_023344_130 Hb_023344_130 Hb_006788_100--Hb_023344_130 Hb_005276_220 Hb_005276_220 Hb_006788_100--Hb_005276_220 Hb_000840_050 Hb_000840_050 Hb_006788_100--Hb_000840_050 Hb_010417_100 Hb_010417_100 Hb_006788_100--Hb_010417_100 Hb_000417_280--Hb_001008_110 Hb_002833_020 Hb_002833_020 Hb_000417_280--Hb_002833_020 Hb_009193_060 Hb_009193_060 Hb_000417_280--Hb_009193_060 Hb_000417_280--Hb_001268_300 Hb_000739_160 Hb_000739_160 Hb_000417_280--Hb_000739_160 Hb_003842_010 Hb_003842_010 Hb_005523_050--Hb_003842_010 Hb_002811_020 Hb_002811_020 Hb_005523_050--Hb_002811_020 Hb_006681_030 Hb_006681_030 Hb_005523_050--Hb_006681_030 Hb_001345_010 Hb_001345_010 Hb_005523_050--Hb_001345_010 Hb_003224_010 Hb_003224_010 Hb_005523_050--Hb_003224_010 Hb_001008_110--Hb_002833_020 Hb_064985_010 Hb_064985_010 Hb_001008_110--Hb_064985_010 Hb_003142_060 Hb_003142_060 Hb_001008_110--Hb_003142_060 Hb_042202_020 Hb_042202_020 Hb_001008_110--Hb_042202_020 Hb_003517_100 Hb_003517_100 Hb_001268_300--Hb_003517_100 Hb_001268_300--Hb_042202_020 Hb_001268_300--Hb_009193_060 Hb_082683_010 Hb_082683_010 Hb_001268_300--Hb_082683_010 Hb_073973_020 Hb_073973_020 Hb_001268_300--Hb_073973_020 Hb_123560_050 Hb_123560_050 Hb_001819_010--Hb_123560_050 Hb_170878_050 Hb_170878_050 Hb_001819_010--Hb_170878_050 Hb_029866_110 Hb_029866_110 Hb_001819_010--Hb_029866_110 Hb_000191_100 Hb_000191_100 Hb_001819_010--Hb_000191_100 Hb_009659_040 Hb_009659_040 Hb_001819_010--Hb_009659_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0652934 1.86856 1.39301 1.00798 0.021211 0.162062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0165338 0.0260241 0.0125305 2.59496 1.42646

CAGE analysis