Hb_032717_080

Information

Type -
Description -
Location Contig32717: 154905-168524
Sequence    

Annotation

kegg
ID rcu:RCOM_0770570
description gamma-soluble nsf attachment protein, putative
nr
ID XP_002529885.1
description gamma-soluble nsf attachment protein, putative [Ricinus communis]
swissprot
ID Q9SPE5
description Gamma-soluble NSF attachment protein OS=Arabidopsis thaliana GN=GSNAP PE=2 SV=1
trembl
ID B9SV66
description Gamma-soluble nsf attachment protein, putative OS=Ricinus communis GN=RCOM_0770570 PE=4 SV=1
Gene Ontology
ID GO:0005622
description gamma-soluble nsf attachment protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34435: 155199-157094 , PASA_asmbl_34436: 155215-157094 , PASA_asmbl_34437: 154887-168360
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032717_080 0.0 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
2 Hb_000103_090 0.0621175354 - - PREDICTED: protein RDM1 [Jatropha curcas]
3 Hb_011310_190 0.0671137599 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
4 Hb_004048_070 0.0675333777 - - PREDICTED: anaphase-promoting complex subunit 6 [Jatropha curcas]
5 Hb_007254_040 0.0683178061 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
6 Hb_000613_140 0.0697163771 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
7 Hb_002105_090 0.0700699826 - - Rab4 [Hevea brasiliensis]
8 Hb_001221_410 0.0739312962 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
9 Hb_046157_020 0.0770854741 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
10 Hb_009954_040 0.0781270399 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
11 Hb_000116_440 0.0781388603 - - PREDICTED: eukaryotic translation initiation factor 6-2 [Jatropha curcas]
12 Hb_003599_040 0.0792539514 - - unnamed protein product [Vitis vinifera]
13 Hb_002685_190 0.0806109525 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
14 Hb_003020_230 0.0814820084 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
15 Hb_002890_140 0.0835706806 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
16 Hb_065525_020 0.0836907569 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
17 Hb_000363_500 0.0837860164 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
18 Hb_002078_150 0.0839216079 - - protein with unknown function [Ricinus communis]
19 Hb_004204_120 0.0842223989 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
20 Hb_000815_040 0.0847430781 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]

Gene co-expression network

sample Hb_032717_080 Hb_032717_080 Hb_000103_090 Hb_000103_090 Hb_032717_080--Hb_000103_090 Hb_011310_190 Hb_011310_190 Hb_032717_080--Hb_011310_190 Hb_004048_070 Hb_004048_070 Hb_032717_080--Hb_004048_070 Hb_007254_040 Hb_007254_040 Hb_032717_080--Hb_007254_040 Hb_000613_140 Hb_000613_140 Hb_032717_080--Hb_000613_140 Hb_002105_090 Hb_002105_090 Hb_032717_080--Hb_002105_090 Hb_002890_140 Hb_002890_140 Hb_000103_090--Hb_002890_140 Hb_033834_040 Hb_033834_040 Hb_000103_090--Hb_033834_040 Hb_004128_190 Hb_004128_190 Hb_000103_090--Hb_004128_190 Hb_002477_330 Hb_002477_330 Hb_000103_090--Hb_002477_330 Hb_000529_190 Hb_000529_190 Hb_000103_090--Hb_000529_190 Hb_011310_190--Hb_007254_040 Hb_005398_030 Hb_005398_030 Hb_011310_190--Hb_005398_030 Hb_007317_180 Hb_007317_180 Hb_011310_190--Hb_007317_180 Hb_001221_410 Hb_001221_410 Hb_011310_190--Hb_001221_410 Hb_011310_190--Hb_000103_090 Hb_015746_010 Hb_015746_010 Hb_004048_070--Hb_015746_010 Hb_004970_110 Hb_004970_110 Hb_004048_070--Hb_004970_110 Hb_004048_070--Hb_007254_040 Hb_001135_050 Hb_001135_050 Hb_004048_070--Hb_001135_050 Hb_005539_030 Hb_005539_030 Hb_004048_070--Hb_005539_030 Hb_008554_020 Hb_008554_020 Hb_007254_040--Hb_008554_020 Hb_007254_040--Hb_007317_180 Hb_000169_010 Hb_000169_010 Hb_007254_040--Hb_000169_010 Hb_007254_040--Hb_004970_110 Hb_007254_040--Hb_001135_050 Hb_000720_120 Hb_000720_120 Hb_000613_140--Hb_000720_120 Hb_003020_230 Hb_003020_230 Hb_000613_140--Hb_003020_230 Hb_004223_280 Hb_004223_280 Hb_000613_140--Hb_004223_280 Hb_000926_250 Hb_000926_250 Hb_000613_140--Hb_000926_250 Hb_003615_010 Hb_003615_010 Hb_000613_140--Hb_003615_010 Hb_000510_130 Hb_000510_130 Hb_000613_140--Hb_000510_130 Hb_000494_020 Hb_000494_020 Hb_002105_090--Hb_000494_020 Hb_004324_310 Hb_004324_310 Hb_002105_090--Hb_004324_310 Hb_070986_010 Hb_070986_010 Hb_002105_090--Hb_070986_010 Hb_001184_090 Hb_001184_090 Hb_002105_090--Hb_001184_090 Hb_010407_040 Hb_010407_040 Hb_002105_090--Hb_010407_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
95.7216 33.8822 36.1743 63.9456 88.3362 114.412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
178.065 133.445 85.8363 74.2437 29.8142

CAGE analysis