Hb_032717_090

Information

Type -
Description -
Location Contig32717: 162217-162957
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_002509827.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032717_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_180214_010 0.122625293 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
3 Hb_003900_040 0.1264102885 - - hypothetical protein [Lotus japonicus]
4 Hb_003169_040 0.1332914844 - - -
5 Hb_008680_010 0.1451826117 - - -
6 Hb_001383_080 0.1600912478 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
7 Hb_004235_020 0.1618613247 - - PREDICTED: uncharacterized protein LOC103322555 [Prunus mume]
8 Hb_017640_010 0.1629193964 - - hypothetical protein JCGZ_18815 [Jatropha curcas]
9 Hb_144027_010 0.1644321625 - - -
10 Hb_004052_130 0.1674984612 - - PREDICTED: cytochrome P450 78A5 [Jatropha curcas]
11 Hb_004445_030 0.1693031716 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007575_010 0.1705695033 - - PREDICTED: cytochrome P450 71A1 [Vitis vinifera]
13 Hb_005623_060 0.1741331608 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_000512_050 0.1741812195 - - hypothetical protein VITISV_005640 [Vitis vinifera]
15 Hb_144838_010 0.1753783382 - - hypothetical protein JCGZ_08246 [Jatropha curcas]
16 Hb_004899_210 0.1792666963 - - PREDICTED: respiratory burst oxidase homolog protein E [Jatropha curcas]
17 Hb_047923_030 0.1794813299 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
18 Hb_003414_040 0.1805166368 - - hypothetical protein VITISV_016691 [Vitis vinifera]
19 Hb_002576_010 0.1853778421 - - -
20 Hb_099878_040 0.1859134102 - - PREDICTED: uncharacterized protein LOC102703670 [Oryza brachyantha]

Gene co-expression network

sample Hb_032717_090 Hb_032717_090 Hb_180214_010 Hb_180214_010 Hb_032717_090--Hb_180214_010 Hb_003900_040 Hb_003900_040 Hb_032717_090--Hb_003900_040 Hb_003169_040 Hb_003169_040 Hb_032717_090--Hb_003169_040 Hb_008680_010 Hb_008680_010 Hb_032717_090--Hb_008680_010 Hb_001383_080 Hb_001383_080 Hb_032717_090--Hb_001383_080 Hb_004235_020 Hb_004235_020 Hb_032717_090--Hb_004235_020 Hb_180214_010--Hb_003169_040 Hb_000512_050 Hb_000512_050 Hb_180214_010--Hb_000512_050 Hb_180214_010--Hb_003900_040 Hb_005623_060 Hb_005623_060 Hb_180214_010--Hb_005623_060 Hb_180214_010--Hb_001383_080 Hb_004899_210 Hb_004899_210 Hb_003900_040--Hb_004899_210 Hb_144027_010 Hb_144027_010 Hb_003900_040--Hb_144027_010 Hb_001250_030 Hb_001250_030 Hb_003900_040--Hb_001250_030 Hb_003900_040--Hb_003169_040 Hb_003169_040--Hb_000512_050 Hb_003169_040--Hb_005623_060 Hb_150516_010 Hb_150516_010 Hb_003169_040--Hb_150516_010 Hb_004052_130 Hb_004052_130 Hb_008680_010--Hb_004052_130 Hb_017640_010 Hb_017640_010 Hb_008680_010--Hb_017640_010 Hb_004445_030 Hb_004445_030 Hb_008680_010--Hb_004445_030 Hb_144838_010 Hb_144838_010 Hb_008680_010--Hb_144838_010 Hb_002598_030 Hb_002598_030 Hb_008680_010--Hb_002598_030 Hb_003414_040 Hb_003414_040 Hb_001383_080--Hb_003414_040 Hb_001383_080--Hb_001250_030 Hb_019654_170 Hb_019654_170 Hb_001383_080--Hb_019654_170 Hb_000432_020 Hb_000432_020 Hb_001383_080--Hb_000432_020 Hb_000346_050 Hb_000346_050 Hb_001383_080--Hb_000346_050 Hb_001383_080--Hb_003900_040 Hb_009888_010 Hb_009888_010 Hb_004235_020--Hb_009888_010 Hb_143398_020 Hb_143398_020 Hb_004235_020--Hb_143398_020 Hb_004235_020--Hb_008680_010 Hb_065395_020 Hb_065395_020 Hb_004235_020--Hb_065395_020 Hb_004235_020--Hb_004445_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.141946 0.0244923 0 0 0.0287407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0477464 0.819736

CAGE analysis