Hb_032718_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig32718: 1148-4335
Sequence    

Annotation

kegg
ID rcu:RCOM_1429720
description phosphoprotein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_002512305.1
description phosphoprotein phosphatase, putative [Ricinus communis]
swissprot
ID Q9T048
description Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1
trembl
ID B9REY6
description Phosphoprotein phosphatase, putative OS=Ricinus communis GN=RCOM_1429720 PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032718_010 0.0 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
2 Hb_027010_030 0.1956116972 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_026698_030 0.2073323014 - - hypothetical protein CISIN_1g030953mg [Citrus sinensis]
4 Hb_007237_010 0.2178923052 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004846_150 0.2263016564 - - hypothetical protein JCGZ_26968 [Jatropha curcas]
6 Hb_034507_010 0.2272243795 transcription factor TF Family: MYB MYB transcription factor [Hevea brasiliensis]
7 Hb_000890_180 0.2279844967 - - glutaredoxin, grx, putative [Ricinus communis]
8 Hb_001353_020 0.2361716468 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005162_140 0.2369129957 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
10 Hb_001817_120 0.2408230977 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Fragaria vesca subsp. vesca]
11 Hb_000959_010 0.2440379322 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
12 Hb_029584_160 0.2452659726 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
13 Hb_002909_080 0.2466818828 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
14 Hb_001123_250 0.2490410384 - - hypothetical protein POPTR_0001s13220g [Populus trichocarpa]
15 Hb_000062_640 0.2505955479 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
16 Hb_114310_060 0.2521625869 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 2G, putative [Ricinus communis]
17 Hb_012092_090 0.256132078 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X2 [Jatropha curcas]
18 Hb_000165_100 0.2568670259 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
19 Hb_006040_170 0.2570252915 - - NADH-ubiquinone oxidoreductase chain [Medicago truncatula]
20 Hb_004574_040 0.2582594158 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]

Gene co-expression network

sample Hb_032718_010 Hb_032718_010 Hb_027010_030 Hb_027010_030 Hb_032718_010--Hb_027010_030 Hb_026698_030 Hb_026698_030 Hb_032718_010--Hb_026698_030 Hb_007237_010 Hb_007237_010 Hb_032718_010--Hb_007237_010 Hb_004846_150 Hb_004846_150 Hb_032718_010--Hb_004846_150 Hb_034507_010 Hb_034507_010 Hb_032718_010--Hb_034507_010 Hb_000890_180 Hb_000890_180 Hb_032718_010--Hb_000890_180 Hb_041813_010 Hb_041813_010 Hb_027010_030--Hb_041813_010 Hb_027010_030--Hb_026698_030 Hb_053079_010 Hb_053079_010 Hb_027010_030--Hb_053079_010 Hb_067345_020 Hb_067345_020 Hb_027010_030--Hb_067345_020 Hb_017098_060 Hb_017098_060 Hb_027010_030--Hb_017098_060 Hb_008803_040 Hb_008803_040 Hb_026698_030--Hb_008803_040 Hb_002943_010 Hb_002943_010 Hb_026698_030--Hb_002943_010 Hb_008226_030 Hb_008226_030 Hb_026698_030--Hb_008226_030 Hb_000404_040 Hb_000404_040 Hb_026698_030--Hb_000404_040 Hb_004574_040 Hb_004574_040 Hb_026698_030--Hb_004574_040 Hb_000959_010 Hb_000959_010 Hb_007237_010--Hb_000959_010 Hb_060198_010 Hb_060198_010 Hb_007237_010--Hb_060198_010 Hb_006040_170 Hb_006040_170 Hb_007237_010--Hb_006040_170 Hb_000120_870 Hb_000120_870 Hb_007237_010--Hb_000120_870 Hb_000465_450 Hb_000465_450 Hb_007237_010--Hb_000465_450 Hb_007951_070 Hb_007951_070 Hb_007237_010--Hb_007951_070 Hb_000207_290 Hb_000207_290 Hb_004846_150--Hb_000207_290 Hb_000700_080 Hb_000700_080 Hb_004846_150--Hb_000700_080 Hb_002876_250 Hb_002876_250 Hb_004846_150--Hb_002876_250 Hb_001242_190 Hb_001242_190 Hb_004846_150--Hb_001242_190 Hb_001486_200 Hb_001486_200 Hb_004846_150--Hb_001486_200 Hb_025708_020 Hb_025708_020 Hb_004846_150--Hb_025708_020 Hb_007590_100 Hb_007590_100 Hb_034507_010--Hb_007590_100 Hb_001976_020 Hb_001976_020 Hb_034507_010--Hb_001976_020 Hb_000227_280 Hb_000227_280 Hb_034507_010--Hb_000227_280 Hb_007894_070 Hb_007894_070 Hb_034507_010--Hb_007894_070 Hb_006414_010 Hb_006414_010 Hb_034507_010--Hb_006414_010 Hb_000800_010 Hb_000800_010 Hb_034507_010--Hb_000800_010 Hb_000236_330 Hb_000236_330 Hb_000890_180--Hb_000236_330 Hb_001842_110 Hb_001842_110 Hb_000890_180--Hb_001842_110 Hb_062447_010 Hb_062447_010 Hb_000890_180--Hb_062447_010 Hb_001123_250 Hb_001123_250 Hb_000890_180--Hb_001123_250 Hb_003159_150 Hb_003159_150 Hb_000890_180--Hb_003159_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0345588 0.544619 0.231037 0.558911 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.381785 0.165643 0.687522

CAGE analysis