Hb_032733_020

Information

Type -
Description -
Location Contig32733: 8262-9385
Sequence    

Annotation

kegg
ID cit:102615151
description probable LRR receptor-like serine/threonine-protein kinase At4g36180-like
nr
ID XP_006481477.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X4 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A059CVL4
description Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_C033302 PE=4 SV=1
Gene Ontology
ID GO:0003824
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032733_020 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X4 [Citrus sinensis]
2 Hb_114271_010 0.1583944559 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
3 Hb_013420_060 0.1655075408 - - NADH dehydrogenase subunit 7 [Nymphaea sp. Bergthorsson 0401]
4 Hb_087797_010 0.176217128 - - kinase, putative [Ricinus communis]
5 Hb_001691_170 0.1910469613 - - PREDICTED: callose synthase 12-like [Glycine max]
6 Hb_003333_040 0.1953555837 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_002005_050 0.1964180857 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
8 Hb_002798_080 0.2052279038 - - hypothetical protein VITISV_043745 [Vitis vinifera]
9 Hb_001671_090 0.2140974025 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_168319_040 0.2190749518 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
11 Hb_000011_440 0.2296948317 - - PREDICTED: GDSL esterase/lipase 1 [Populus euphratica]
12 Hb_139365_010 0.2300319141 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
13 Hb_122028_010 0.2303628589 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
14 Hb_000101_340 0.231360658 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Ricinus communis]
15 Hb_032260_110 0.2355188224 - - conserved hypothetical protein [Ricinus communis]
16 Hb_189208_030 0.2366316208 - - -
17 Hb_000826_080 0.2375660292 - - -
18 Hb_185274_010 0.2384966608 - - hypothetical protein ARALYDRAFT_330174 [Arabidopsis lyrata subsp. lyrata]
19 Hb_001517_060 0.2386651079 - - phosphoribulose kinase, putative [Ricinus communis]
20 Hb_007253_030 0.2386717036 - - PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_032733_020 Hb_032733_020 Hb_114271_010 Hb_114271_010 Hb_032733_020--Hb_114271_010 Hb_013420_060 Hb_013420_060 Hb_032733_020--Hb_013420_060 Hb_087797_010 Hb_087797_010 Hb_032733_020--Hb_087797_010 Hb_001691_170 Hb_001691_170 Hb_032733_020--Hb_001691_170 Hb_003333_040 Hb_003333_040 Hb_032733_020--Hb_003333_040 Hb_002005_050 Hb_002005_050 Hb_032733_020--Hb_002005_050 Hb_032260_110 Hb_032260_110 Hb_114271_010--Hb_032260_110 Hb_004108_190 Hb_004108_190 Hb_114271_010--Hb_004108_190 Hb_129420_010 Hb_129420_010 Hb_114271_010--Hb_129420_010 Hb_114271_010--Hb_013420_060 Hb_114271_010--Hb_002005_050 Hb_000574_330 Hb_000574_330 Hb_013420_060--Hb_000574_330 Hb_004712_200 Hb_004712_200 Hb_013420_060--Hb_004712_200 Hb_013420_060--Hb_003333_040 Hb_011900_020 Hb_011900_020 Hb_013420_060--Hb_011900_020 Hb_000029_380 Hb_000029_380 Hb_013420_060--Hb_000029_380 Hb_000261_390 Hb_000261_390 Hb_087797_010--Hb_000261_390 Hb_007044_020 Hb_007044_020 Hb_087797_010--Hb_007044_020 Hb_001832_180 Hb_001832_180 Hb_087797_010--Hb_001832_180 Hb_000009_470 Hb_000009_470 Hb_087797_010--Hb_000009_470 Hb_001289_050 Hb_001289_050 Hb_087797_010--Hb_001289_050 Hb_000282_100 Hb_000282_100 Hb_087797_010--Hb_000282_100 Hb_007426_070 Hb_007426_070 Hb_001691_170--Hb_007426_070 Hb_168319_040 Hb_168319_040 Hb_001691_170--Hb_168319_040 Hb_000483_440 Hb_000483_440 Hb_001691_170--Hb_000483_440 Hb_000081_110 Hb_000081_110 Hb_001691_170--Hb_000081_110 Hb_001517_060 Hb_001517_060 Hb_001691_170--Hb_001517_060 Hb_000017_210 Hb_000017_210 Hb_001691_170--Hb_000017_210 Hb_001671_090 Hb_001671_090 Hb_003333_040--Hb_001671_090 Hb_007413_030 Hb_007413_030 Hb_003333_040--Hb_007413_030 Hb_053998_020 Hb_053998_020 Hb_003333_040--Hb_053998_020 Hb_003333_040--Hb_114271_010 Hb_158247_010 Hb_158247_010 Hb_002005_050--Hb_158247_010 Hb_006970_030 Hb_006970_030 Hb_002005_050--Hb_006970_030 Hb_000161_010 Hb_000161_010 Hb_002005_050--Hb_000161_010 Hb_005305_070 Hb_005305_070 Hb_002005_050--Hb_005305_070 Hb_001699_140 Hb_001699_140 Hb_002005_050--Hb_001699_140 Hb_000101_330 Hb_000101_330 Hb_002005_050--Hb_000101_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.161789 0.0612134 0.223471 0.0938413 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0551025 0.946834

CAGE analysis