Hb_032733_030

Information

Type -
Description -
Location Contig32733: 10301-10939
Sequence    

Annotation

kegg
ID cic:CICLE_v100040452m
description hypothetical protein
nr
ID KDO36983.1
description hypothetical protein CISIN_1g048657mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067D2E9
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048657mg PE=4 SV=1
Gene Ontology
ID GO:0016491
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032733_030 0.0 - - hypothetical protein CISIN_1g048657mg, partial [Citrus sinensis]
2 Hb_000522_030 0.1224792403 - - hypothetical protein VITISV_006017 [Vitis vinifera]
3 Hb_012528_040 0.1314070633 - - -
4 Hb_014109_020 0.1338902001 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
5 Hb_000135_080 0.1410726944 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
6 Hb_005623_060 0.1411510416 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_005678_030 0.1437272116 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
8 Hb_000476_030 0.144804235 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
9 Hb_027917_010 0.1461474533 - - PREDICTED: uncharacterized protein LOC103699089, partial [Phoenix dactylifera]
10 Hb_000432_020 0.1528408966 desease resistance Gene Name: Tropomyosin_1 PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
11 Hb_011931_090 0.1577733844 - - -
12 Hb_150516_010 0.1651731163 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
13 Hb_001383_080 0.165247886 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
14 Hb_000512_050 0.1670703165 - - hypothetical protein VITISV_005640 [Vitis vinifera]
15 Hb_034168_010 0.168548009 - - hypothetical protein [Azospirillum sp. CAG:260]
16 Hb_001793_040 0.1693606826 - - hypothetical protein VITISV_006810 [Vitis vinifera]
17 Hb_161881_010 0.1711331569 - - laccase, putative [Ricinus communis]
18 Hb_168319_040 0.1738350121 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
19 Hb_004374_090 0.1740164349 transcription factor TF Family: HB PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
20 Hb_023738_010 0.1759219942 - - Concanavalin A-like lectin protein kinase family protein [Theobroma cacao]

Gene co-expression network

sample Hb_032733_030 Hb_032733_030 Hb_000522_030 Hb_000522_030 Hb_032733_030--Hb_000522_030 Hb_012528_040 Hb_012528_040 Hb_032733_030--Hb_012528_040 Hb_014109_020 Hb_014109_020 Hb_032733_030--Hb_014109_020 Hb_000135_080 Hb_000135_080 Hb_032733_030--Hb_000135_080 Hb_005623_060 Hb_005623_060 Hb_032733_030--Hb_005623_060 Hb_005678_030 Hb_005678_030 Hb_032733_030--Hb_005678_030 Hb_011931_090 Hb_011931_090 Hb_000522_030--Hb_011931_090 Hb_150516_010 Hb_150516_010 Hb_000522_030--Hb_150516_010 Hb_000476_030 Hb_000476_030 Hb_000522_030--Hb_000476_030 Hb_000522_030--Hb_005623_060 Hb_000522_030--Hb_000135_080 Hb_000405_010 Hb_000405_010 Hb_000522_030--Hb_000405_010 Hb_161881_010 Hb_161881_010 Hb_012528_040--Hb_161881_010 Hb_000123_070 Hb_000123_070 Hb_012528_040--Hb_000123_070 Hb_001001_130 Hb_001001_130 Hb_012528_040--Hb_001001_130 Hb_002010_010 Hb_002010_010 Hb_012528_040--Hb_002010_010 Hb_012528_040--Hb_000135_080 Hb_012528_040--Hb_014109_020 Hb_014109_020--Hb_000522_030 Hb_014109_020--Hb_005623_060 Hb_004375_020 Hb_004375_020 Hb_014109_020--Hb_004375_020 Hb_002630_030 Hb_002630_030 Hb_014109_020--Hb_002630_030 Hb_014109_020--Hb_011931_090 Hb_000135_080--Hb_000476_030 Hb_000135_080--Hb_005678_030 Hb_000135_080--Hb_001001_130 Hb_001856_290 Hb_001856_290 Hb_000135_080--Hb_001856_290 Hb_000858_050 Hb_000858_050 Hb_000135_080--Hb_000858_050 Hb_000512_050 Hb_000512_050 Hb_005623_060--Hb_000512_050 Hb_005623_060--Hb_150516_010 Hb_003169_040 Hb_003169_040 Hb_005623_060--Hb_003169_040 Hb_080033_020 Hb_080033_020 Hb_005623_060--Hb_080033_020 Hb_077151_010 Hb_077151_010 Hb_005678_030--Hb_077151_010 Hb_005678_030--Hb_000476_030 Hb_168319_040 Hb_168319_040 Hb_005678_030--Hb_168319_040 Hb_006455_020 Hb_006455_020 Hb_005678_030--Hb_006455_020 Hb_000441_080 Hb_000441_080 Hb_005678_030--Hb_000441_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.168037 0.281003 0.037177 0.0746475 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.207015 2.96932

CAGE analysis