Hb_032779_010

Information

Type -
Description -
Location Contig32779: 37-2796
Sequence    

Annotation

kegg
ID vvi:100257572
description cinnamoyl-CoA reductase 1-like
nr
ID CBI40605.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q500U8
description Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=1 SV=1
trembl
ID D7UCZ0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g00590 PE=4 SV=1
Gene Ontology
ID GO:0003824
description cinnamoyl- reductase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032779_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000427_040 0.0516202858 - - Gibberellin receptor GID1, putative [Ricinus communis]
3 Hb_014700_030 0.0632566414 - - tryptophan synthase beta chain, putative [Ricinus communis]
4 Hb_004880_050 0.0700408596 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001789_120 0.0848783255 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
6 Hb_005051_010 0.0859403465 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
7 Hb_002902_070 0.0883269887 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
8 Hb_000868_130 0.0983132041 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
9 Hb_001046_030 0.0984658902 - - UDP-glucosyltransferase, putative [Ricinus communis]
10 Hb_000025_590 0.0994929025 - - PREDICTED: cytochrome P450 94A1-like isoform X1 [Jatropha curcas]
11 Hb_000010_370 0.101899174 - - PREDICTED: uncharacterized protein LOC105640263 [Jatropha curcas]
12 Hb_000069_540 0.1077947047 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
13 Hb_000941_090 0.1078067325 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
14 Hb_162676_010 0.1081502773 - - ATP binding protein, putative [Ricinus communis]
15 Hb_010222_060 0.1084254613 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_031862_120 0.1087482734 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
17 Hb_017358_020 0.1102987815 - - hypothetical protein POPTR_0014s16490g [Populus trichocarpa]
18 Hb_032695_010 0.1105168765 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Vitis vinifera]
19 Hb_000215_290 0.1120710652 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
20 Hb_000680_130 0.1133610342 - - beta-galactosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_032779_010 Hb_032779_010 Hb_000427_040 Hb_000427_040 Hb_032779_010--Hb_000427_040 Hb_014700_030 Hb_014700_030 Hb_032779_010--Hb_014700_030 Hb_004880_050 Hb_004880_050 Hb_032779_010--Hb_004880_050 Hb_001789_120 Hb_001789_120 Hb_032779_010--Hb_001789_120 Hb_005051_010 Hb_005051_010 Hb_032779_010--Hb_005051_010 Hb_002902_070 Hb_002902_070 Hb_032779_010--Hb_002902_070 Hb_000427_040--Hb_005051_010 Hb_000427_040--Hb_002902_070 Hb_000427_040--Hb_014700_030 Hb_001305_020 Hb_001305_020 Hb_000427_040--Hb_001305_020 Hb_000069_540 Hb_000069_540 Hb_000427_040--Hb_000069_540 Hb_014700_030--Hb_001789_120 Hb_014700_030--Hb_004880_050 Hb_010222_060 Hb_010222_060 Hb_014700_030--Hb_010222_060 Hb_013394_120 Hb_013394_120 Hb_014700_030--Hb_013394_120 Hb_132840_170 Hb_132840_170 Hb_014700_030--Hb_132840_170 Hb_004880_050--Hb_001789_120 Hb_000818_090 Hb_000818_090 Hb_004880_050--Hb_000818_090 Hb_004880_050--Hb_013394_120 Hb_004880_050--Hb_010222_060 Hb_001789_120--Hb_013394_120 Hb_001789_120--Hb_000818_090 Hb_001789_120--Hb_010222_060 Hb_001789_120--Hb_132840_170 Hb_005051_010--Hb_001305_020 Hb_005051_010--Hb_014700_030 Hb_000622_030 Hb_000622_030 Hb_005051_010--Hb_000622_030 Hb_000434_060 Hb_000434_060 Hb_005051_010--Hb_000434_060 Hb_002902_070--Hb_000069_540 Hb_000868_130 Hb_000868_130 Hb_002902_070--Hb_000868_130 Hb_002902_070--Hb_001305_020 Hb_000834_100 Hb_000834_100 Hb_002902_070--Hb_000834_100 Hb_144703_010 Hb_144703_010 Hb_002902_070--Hb_144703_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.836165 0.762899 0.975881 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.265136 1.4039

CAGE analysis