Hb_032808_010

Information

Type -
Description -
Location Contig32808: 13464-18658
Sequence    

Annotation

kegg
ID rcu:RCOM_0854900
description voltage-dependent anion-selective channel, putative
nr
ID XP_012082894.1
description PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
swissprot
ID P42055
description Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2
trembl
ID A0A067LDZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09722 PE=4 SV=1
Gene Ontology
ID GO:0005741
description mitochondrial outer membrane protein porin of 34 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34451: 13490-18583 , PASA_asmbl_34452: 15658-18583 , PASA_asmbl_34453: 16434-16555 , PASA_asmbl_34454: 14324-15476 , PASA_asmbl_34455: 13541-14323 , PASA_asmbl_34457: 18639-20457
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032808_010 0.0 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
2 Hb_005730_120 0.0573954178 - - PREDICTED: protein WHI4 [Jatropha curcas]
3 Hb_005271_220 0.064041414 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
4 Hb_008511_120 0.0648323076 - - NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus communis]
5 Hb_002303_070 0.0800906056 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
6 Hb_003994_290 0.080168118 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Jatropha curcas]
7 Hb_003376_330 0.0828471231 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
8 Hb_001599_040 0.0829648736 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
9 Hb_004070_020 0.0835242185 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
10 Hb_005357_080 0.0836983326 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
11 Hb_007423_040 0.0851428105 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
12 Hb_002232_410 0.0852493235 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
13 Hb_008013_050 0.0854920962 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
14 Hb_024958_010 0.0856246968 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
15 Hb_001357_350 0.0871706919 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006570_080 0.0877896835 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
17 Hb_002936_010 0.088120809 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
18 Hb_000331_180 0.0882590288 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640220 [Jatropha curcas]
19 Hb_000297_160 0.0884043724 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
20 Hb_000510_300 0.0905538055 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_032808_010 Hb_032808_010 Hb_005730_120 Hb_005730_120 Hb_032808_010--Hb_005730_120 Hb_005271_220 Hb_005271_220 Hb_032808_010--Hb_005271_220 Hb_008511_120 Hb_008511_120 Hb_032808_010--Hb_008511_120 Hb_002303_070 Hb_002303_070 Hb_032808_010--Hb_002303_070 Hb_003994_290 Hb_003994_290 Hb_032808_010--Hb_003994_290 Hb_003376_330 Hb_003376_330 Hb_032808_010--Hb_003376_330 Hb_005730_120--Hb_005271_220 Hb_005730_120--Hb_002303_070 Hb_001599_040 Hb_001599_040 Hb_005730_120--Hb_001599_040 Hb_004453_130 Hb_004453_130 Hb_005730_120--Hb_004453_130 Hb_002311_180 Hb_002311_180 Hb_005730_120--Hb_002311_180 Hb_002232_410 Hb_002232_410 Hb_005271_220--Hb_002232_410 Hb_005271_220--Hb_002303_070 Hb_005271_220--Hb_008511_120 Hb_000403_050 Hb_000403_050 Hb_005271_220--Hb_000403_050 Hb_008511_120--Hb_002232_410 Hb_003918_010 Hb_003918_010 Hb_008511_120--Hb_003918_010 Hb_000521_320 Hb_000521_320 Hb_008511_120--Hb_000521_320 Hb_005357_080 Hb_005357_080 Hb_008511_120--Hb_005357_080 Hb_000215_110 Hb_000215_110 Hb_002303_070--Hb_000215_110 Hb_003226_140 Hb_003226_140 Hb_002303_070--Hb_003226_140 Hb_002303_070--Hb_001599_040 Hb_002303_070--Hb_005357_080 Hb_002016_170 Hb_002016_170 Hb_003994_290--Hb_002016_170 Hb_001711_020 Hb_001711_020 Hb_003994_290--Hb_001711_020 Hb_003994_290--Hb_008511_120 Hb_008013_050 Hb_008013_050 Hb_003994_290--Hb_008013_050 Hb_000521_080 Hb_000521_080 Hb_003994_290--Hb_000521_080 Hb_000270_490 Hb_000270_490 Hb_003376_330--Hb_000270_490 Hb_073973_100 Hb_073973_100 Hb_003376_330--Hb_073973_100 Hb_023732_030 Hb_023732_030 Hb_003376_330--Hb_023732_030 Hb_003376_330--Hb_002232_410 Hb_026198_070 Hb_026198_070 Hb_003376_330--Hb_026198_070 Hb_003693_070 Hb_003693_070 Hb_003376_330--Hb_003693_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.1928 19.6505 37.4602 35.7638 25.1263 26.9541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.8686 39.2144 26.1275 32.7397 18.8656

CAGE analysis