Hb_032808_030

Information

Type -
Description -
Location Contig32808: 23850-30098
Sequence    

Annotation

kegg
ID rcu:RCOM_0854780
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.11.25)
nr
ID XP_002517468.1
description Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9LFP7
description Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=2 SV=1
trembl
ID B9RUM3
description Protein kinase APK1B, chloroplast, putative OS=Ricinus communis GN=RCOM_0854780 PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable receptor-like protein kinase at5g15080 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34460: 28741-28941 , PASA_asmbl_34461: 23983-29937 , PASA_asmbl_34462: 24964-28317
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032808_030 0.0 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
2 Hb_000236_410 0.0667945032 - - Paramyosin, putative [Ricinus communis]
3 Hb_000213_120 0.0694046547 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_000925_140 0.0788992382 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
5 Hb_002662_020 0.0809857474 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
6 Hb_000105_040 0.0817540599 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
7 Hb_001105_160 0.0824615258 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
8 Hb_001935_140 0.0825863671 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
9 Hb_000291_090 0.0842424127 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X2 [Jatropha curcas]
10 Hb_000406_110 0.0862501943 - - PREDICTED: transmembrane protein adipocyte-associated 1 [Jatropha curcas]
11 Hb_000487_380 0.0875498032 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
12 Hb_000069_410 0.0897975371 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
13 Hb_144744_010 0.0921870958 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
14 Hb_011287_050 0.092193531 - - PREDICTED: uncharacterized protein LOC105644786 [Jatropha curcas]
15 Hb_004586_290 0.0927202776 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
16 Hb_013399_070 0.09308019 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
17 Hb_001123_050 0.0961370683 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011849_040 0.0973519483 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_000402_230 0.0974392556 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
20 Hb_000862_040 0.097748821 - - ara4-interacting protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_032808_030 Hb_032808_030 Hb_000236_410 Hb_000236_410 Hb_032808_030--Hb_000236_410 Hb_000213_120 Hb_000213_120 Hb_032808_030--Hb_000213_120 Hb_000925_140 Hb_000925_140 Hb_032808_030--Hb_000925_140 Hb_002662_020 Hb_002662_020 Hb_032808_030--Hb_002662_020 Hb_000105_040 Hb_000105_040 Hb_032808_030--Hb_000105_040 Hb_001105_160 Hb_001105_160 Hb_032808_030--Hb_001105_160 Hb_144744_010 Hb_144744_010 Hb_000236_410--Hb_144744_010 Hb_093084_070 Hb_093084_070 Hb_000236_410--Hb_093084_070 Hb_010712_090 Hb_010712_090 Hb_000236_410--Hb_010712_090 Hb_001055_030 Hb_001055_030 Hb_000236_410--Hb_001055_030 Hb_001935_140 Hb_001935_140 Hb_000236_410--Hb_001935_140 Hb_000213_120--Hb_000925_140 Hb_000369_130 Hb_000369_130 Hb_000213_120--Hb_000369_130 Hb_001123_050 Hb_001123_050 Hb_000213_120--Hb_001123_050 Hb_000862_040 Hb_000862_040 Hb_000213_120--Hb_000862_040 Hb_000213_120--Hb_002662_020 Hb_000925_140--Hb_000236_410 Hb_000925_140--Hb_000105_040 Hb_013399_070 Hb_013399_070 Hb_000925_140--Hb_013399_070 Hb_000925_140--Hb_001935_140 Hb_005269_040 Hb_005269_040 Hb_002662_020--Hb_005269_040 Hb_004143_040 Hb_004143_040 Hb_002662_020--Hb_004143_040 Hb_000116_410 Hb_000116_410 Hb_002662_020--Hb_000116_410 Hb_002026_210 Hb_002026_210 Hb_002662_020--Hb_002026_210 Hb_000347_180 Hb_000347_180 Hb_002662_020--Hb_000347_180 Hb_000105_040--Hb_001935_140 Hb_001699_280 Hb_001699_280 Hb_000105_040--Hb_001699_280 Hb_003581_170 Hb_003581_170 Hb_000105_040--Hb_003581_170 Hb_005542_140 Hb_005542_140 Hb_000105_040--Hb_005542_140 Hb_000069_410 Hb_000069_410 Hb_000105_040--Hb_000069_410 Hb_001951_170 Hb_001951_170 Hb_000105_040--Hb_001951_170 Hb_011287_050 Hb_011287_050 Hb_001105_160--Hb_011287_050 Hb_041327_010 Hb_041327_010 Hb_001105_160--Hb_041327_010 Hb_005568_040 Hb_005568_040 Hb_001105_160--Hb_005568_040 Hb_012092_060 Hb_012092_060 Hb_001105_160--Hb_012092_060 Hb_071130_010 Hb_071130_010 Hb_001105_160--Hb_071130_010 Hb_010809_010 Hb_010809_010 Hb_001105_160--Hb_010809_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.68723 14.1315 3.03079 8.38026 6.03026 8.73395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.38112 5.25169 4.63991 9.45484 4.8521

CAGE analysis