Hb_032823_020

Information

Type -
Description -
Location Contig32823: 13819-19861
Sequence    

Annotation

kegg
ID rcu:RCOM_0137960
description hypothetical protein
nr
ID XP_002526154.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q94CA0
description Protein LAZ1 homolog 1 OS=Arabidopsis thaliana GN=At1g77220 PE=2 SV=1
trembl
ID B9SJI5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0137960 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 184 homolog ddb_g0279555 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34464: 13551-13797 , PASA_asmbl_34465: 13816-19773
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032823_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008054_040 0.081682577 - - PREDICTED: cullin-4 [Jatropha curcas]
3 Hb_008206_080 0.0853418823 - - PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Jatropha curcas]
4 Hb_000878_160 0.0945535134 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]
5 Hb_003093_040 0.0956653683 - - PREDICTED: nucleolar complex protein 4 homolog isoform X1 [Jatropha curcas]
6 Hb_024758_020 0.0960223281 - - acyl-CoA binding protein 3B [Vernicia fordii]
7 Hb_012633_050 0.0977462461 - - zinc finger protein, putative [Ricinus communis]
8 Hb_001824_030 0.0981302156 - - plant sec1, putative [Ricinus communis]
9 Hb_033642_040 0.1015902109 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
10 Hb_009178_010 0.1023945766 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
11 Hb_005333_140 0.1027355392 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
12 Hb_000300_560 0.1034691621 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
13 Hb_002045_170 0.105633455 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
14 Hb_033642_120 0.1060234793 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
15 Hb_000172_360 0.1060759761 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
16 Hb_000229_050 0.1060871042 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
17 Hb_000098_240 0.1061619714 - - PREDICTED: UDP-glucose:glycoprotein glucosyltransferase [Jatropha curcas]
18 Hb_000994_020 0.1069668217 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
19 Hb_005701_090 0.106984523 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_004724_390 0.1076016589 - - PREDICTED: nicalin-1-like [Populus euphratica]

Gene co-expression network

sample Hb_032823_020 Hb_032823_020 Hb_008054_040 Hb_008054_040 Hb_032823_020--Hb_008054_040 Hb_008206_080 Hb_008206_080 Hb_032823_020--Hb_008206_080 Hb_000878_160 Hb_000878_160 Hb_032823_020--Hb_000878_160 Hb_003093_040 Hb_003093_040 Hb_032823_020--Hb_003093_040 Hb_024758_020 Hb_024758_020 Hb_032823_020--Hb_024758_020 Hb_012633_050 Hb_012633_050 Hb_032823_020--Hb_012633_050 Hb_005333_140 Hb_005333_140 Hb_008054_040--Hb_005333_140 Hb_009158_060 Hb_009158_060 Hb_008054_040--Hb_009158_060 Hb_033642_120 Hb_033642_120 Hb_008054_040--Hb_033642_120 Hb_000996_020 Hb_000996_020 Hb_008054_040--Hb_000996_020 Hb_002461_020 Hb_002461_020 Hb_008054_040--Hb_002461_020 Hb_000229_050 Hb_000229_050 Hb_008206_080--Hb_000229_050 Hb_000579_080 Hb_000579_080 Hb_008206_080--Hb_000579_080 Hb_008206_080--Hb_012633_050 Hb_159809_070 Hb_159809_070 Hb_008206_080--Hb_159809_070 Hb_008304_020 Hb_008304_020 Hb_008206_080--Hb_008304_020 Hb_000101_390 Hb_000101_390 Hb_008206_080--Hb_000101_390 Hb_000878_160--Hb_002461_020 Hb_002600_070 Hb_002600_070 Hb_000878_160--Hb_002600_070 Hb_009178_010 Hb_009178_010 Hb_000878_160--Hb_009178_010 Hb_007283_010 Hb_007283_010 Hb_000878_160--Hb_007283_010 Hb_004324_330 Hb_004324_330 Hb_000878_160--Hb_004324_330 Hb_000878_160--Hb_005333_140 Hb_000011_270 Hb_000011_270 Hb_003093_040--Hb_000011_270 Hb_000175_410 Hb_000175_410 Hb_003093_040--Hb_000175_410 Hb_001221_180 Hb_001221_180 Hb_003093_040--Hb_001221_180 Hb_001999_140 Hb_001999_140 Hb_003093_040--Hb_001999_140 Hb_002374_230 Hb_002374_230 Hb_003093_040--Hb_002374_230 Hb_000661_120 Hb_000661_120 Hb_003093_040--Hb_000661_120 Hb_002849_050 Hb_002849_050 Hb_024758_020--Hb_002849_050 Hb_158845_060 Hb_158845_060 Hb_024758_020--Hb_158845_060 Hb_005298_020 Hb_005298_020 Hb_024758_020--Hb_005298_020 Hb_000297_030 Hb_000297_030 Hb_024758_020--Hb_000297_030 Hb_003964_110 Hb_003964_110 Hb_024758_020--Hb_003964_110 Hb_001504_010 Hb_001504_010 Hb_012633_050--Hb_001504_010 Hb_012633_050--Hb_000579_080 Hb_006438_020 Hb_006438_020 Hb_012633_050--Hb_006438_020 Hb_012633_050--Hb_000229_050 Hb_172979_010 Hb_172979_010 Hb_012633_050--Hb_172979_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.50969 5.71175 12.6013 6.04139 5.38913 3.4916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.86154 2.61835 2.05168 8.57389 7.11106

CAGE analysis