Hb_032876_030

Information

Type -
Description -
Location Contig32876: 18907-20436
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032876_030 0.0 - - -
2 Hb_000215_160 0.1633769884 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
3 Hb_006905_030 0.178524927 - - -
4 Hb_003292_030 0.1856619555 - - PREDICTED: exosome complex component RRP42 [Populus euphratica]
5 Hb_001492_030 0.1890930966 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Jatropha curcas]
6 Hb_127552_040 0.1903935826 - - Uncharacterized protein L484_000643 [Morus notabilis]
7 Hb_012055_030 0.1921524099 - - Protein FRIGIDA, putative [Ricinus communis]
8 Hb_007101_080 0.1962465965 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
9 Hb_022958_010 0.1963272262 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
10 Hb_001435_030 0.1964261628 - - PREDICTED: uncharacterized protein LOC105645073 [Jatropha curcas]
11 Hb_004724_410 0.1969214788 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
12 Hb_005271_110 0.1978409734 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
13 Hb_000027_190 0.1979963478 - - PREDICTED: uncharacterized protein LOC105642057 isoform X1 [Jatropha curcas]
14 Hb_001981_040 0.2022010259 transcription factor TF Family: PHD PREDICTED: origin of replication complex subunit 1B-like [Jatropha curcas]
15 Hb_012022_070 0.2033477656 - - RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
16 Hb_000922_380 0.2064506878 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 [Jatropha curcas]
17 Hb_006573_150 0.2071591281 - - PREDICTED: DNA-directed primase/polymerase protein [Jatropha curcas]
18 Hb_031091_020 0.2095276712 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
19 Hb_000723_040 0.2096716094 - - PREDICTED: histidine--tRNA ligase, cytoplasmic [Jatropha curcas]
20 Hb_012733_030 0.2102225894 - - hypothetical protein OsI_15243 [Oryza sativa Indica Group]

Gene co-expression network

sample Hb_032876_030 Hb_032876_030 Hb_000215_160 Hb_000215_160 Hb_032876_030--Hb_000215_160 Hb_006905_030 Hb_006905_030 Hb_032876_030--Hb_006905_030 Hb_003292_030 Hb_003292_030 Hb_032876_030--Hb_003292_030 Hb_001492_030 Hb_001492_030 Hb_032876_030--Hb_001492_030 Hb_127552_040 Hb_127552_040 Hb_032876_030--Hb_127552_040 Hb_012055_030 Hb_012055_030 Hb_032876_030--Hb_012055_030 Hb_001098_050 Hb_001098_050 Hb_000215_160--Hb_001098_050 Hb_004724_410 Hb_004724_410 Hb_000215_160--Hb_004724_410 Hb_000215_160--Hb_127552_040 Hb_000215_160--Hb_003292_030 Hb_027792_020 Hb_027792_020 Hb_000215_160--Hb_027792_020 Hb_006573_150 Hb_006573_150 Hb_006905_030--Hb_006573_150 Hb_005601_020 Hb_005601_020 Hb_006905_030--Hb_005601_020 Hb_001981_040 Hb_001981_040 Hb_006905_030--Hb_001981_040 Hb_167103_010 Hb_167103_010 Hb_006905_030--Hb_167103_010 Hb_000062_510 Hb_000062_510 Hb_006905_030--Hb_000062_510 Hb_114893_040 Hb_114893_040 Hb_006905_030--Hb_114893_040 Hb_003292_030--Hb_012055_030 Hb_000075_040 Hb_000075_040 Hb_003292_030--Hb_000075_040 Hb_005542_130 Hb_005542_130 Hb_003292_030--Hb_005542_130 Hb_003159_140 Hb_003159_140 Hb_003292_030--Hb_003159_140 Hb_004846_220 Hb_004846_220 Hb_003292_030--Hb_004846_220 Hb_001247_310 Hb_001247_310 Hb_003292_030--Hb_001247_310 Hb_000864_030 Hb_000864_030 Hb_001492_030--Hb_000864_030 Hb_008059_010 Hb_008059_010 Hb_001492_030--Hb_008059_010 Hb_031284_010 Hb_031284_010 Hb_001492_030--Hb_031284_010 Hb_000804_040 Hb_000804_040 Hb_001492_030--Hb_000804_040 Hb_000115_280 Hb_000115_280 Hb_001492_030--Hb_000115_280 Hb_025557_050 Hb_025557_050 Hb_001492_030--Hb_025557_050 Hb_188126_010 Hb_188126_010 Hb_127552_040--Hb_188126_010 Hb_002909_090 Hb_002909_090 Hb_127552_040--Hb_002909_090 Hb_000640_100 Hb_000640_100 Hb_127552_040--Hb_000640_100 Hb_005801_020 Hb_005801_020 Hb_127552_040--Hb_005801_020 Hb_000027_190 Hb_000027_190 Hb_127552_040--Hb_000027_190 Hb_000661_030 Hb_000661_030 Hb_127552_040--Hb_000661_030 Hb_012055_030--Hb_000075_040 Hb_017987_030 Hb_017987_030 Hb_012055_030--Hb_017987_030 Hb_012055_030--Hb_005542_130 Hb_004450_040 Hb_004450_040 Hb_012055_030--Hb_004450_040 Hb_001109_050 Hb_001109_050 Hb_012055_030--Hb_001109_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.67379 0.212232 1.14718 0.445863 0.53912 1.27272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.199478 0.940649 0.686324 1.67079 1.97469

CAGE analysis