Hb_032920_020

Information

Type transcription factor
Description TF Family: LOB
Location Contig32920: 7111-7818
Sequence    

Annotation

kegg
ID rcu:RCOM_0174840
description LOB domain-containing protein, putative
nr
ID XP_002527499.1
description LOB domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9SN23
description LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1
trembl
ID B9SND0
description LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0174840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032920_020 0.0 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
2 Hb_001674_010 0.049353778 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
3 Hb_000009_270 0.0497475957 - - Calmodulin, putative [Ricinus communis]
4 Hb_002609_120 0.0549028313 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
5 Hb_000028_190 0.0638082908 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
6 Hb_001638_200 0.0691495401 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
7 Hb_002150_090 0.0713051325 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
8 Hb_000156_110 0.0735625186 - - Uncharacterized protein TCM_029490 [Theobroma cacao]
9 Hb_001095_020 0.0748606624 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
10 Hb_004635_120 0.0792462857 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
11 Hb_000000_390 0.0800921745 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
12 Hb_001021_120 0.0808930603 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
13 Hb_002066_110 0.0818454904 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
14 Hb_051663_010 0.0831501925 - - receptor-kinase, putative [Ricinus communis]
15 Hb_000483_450 0.0837337472 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
16 Hb_002835_310 0.0840397145 - - ATP binding protein, putative [Ricinus communis]
17 Hb_008054_030 0.0846403003 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
18 Hb_000928_030 0.0852601628 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
19 Hb_017434_010 0.0856787913 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
20 Hb_004137_040 0.0860692055 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]

Gene co-expression network

sample Hb_032920_020 Hb_032920_020 Hb_001674_010 Hb_001674_010 Hb_032920_020--Hb_001674_010 Hb_000009_270 Hb_000009_270 Hb_032920_020--Hb_000009_270 Hb_002609_120 Hb_002609_120 Hb_032920_020--Hb_002609_120 Hb_000028_190 Hb_000028_190 Hb_032920_020--Hb_000028_190 Hb_001638_200 Hb_001638_200 Hb_032920_020--Hb_001638_200 Hb_002150_090 Hb_002150_090 Hb_032920_020--Hb_002150_090 Hb_001095_020 Hb_001095_020 Hb_001674_010--Hb_001095_020 Hb_001674_010--Hb_000028_190 Hb_001674_010--Hb_000009_270 Hb_001674_010--Hb_002150_090 Hb_002066_110 Hb_002066_110 Hb_001674_010--Hb_002066_110 Hb_000009_270--Hb_002609_120 Hb_001021_120 Hb_001021_120 Hb_000009_270--Hb_001021_120 Hb_017434_010 Hb_017434_010 Hb_000009_270--Hb_017434_010 Hb_098315_060 Hb_098315_060 Hb_000009_270--Hb_098315_060 Hb_002609_120--Hb_001638_200 Hb_009486_050 Hb_009486_050 Hb_002609_120--Hb_009486_050 Hb_000156_110 Hb_000156_110 Hb_002609_120--Hb_000156_110 Hb_002609_120--Hb_001021_120 Hb_004137_040 Hb_004137_040 Hb_000028_190--Hb_004137_040 Hb_000028_190--Hb_002150_090 Hb_000483_450 Hb_000483_450 Hb_000028_190--Hb_000483_450 Hb_008054_030 Hb_008054_030 Hb_000028_190--Hb_008054_030 Hb_000928_030 Hb_000928_030 Hb_000028_190--Hb_000928_030 Hb_004635_120 Hb_004635_120 Hb_001638_200--Hb_004635_120 Hb_001439_080 Hb_001439_080 Hb_001638_200--Hb_001439_080 Hb_001638_200--Hb_000009_270 Hb_001638_200--Hb_000156_110 Hb_002150_090--Hb_001095_020 Hb_007163_100 Hb_007163_100 Hb_002150_090--Hb_007163_100 Hb_002150_090--Hb_008054_030 Hb_002150_090--Hb_002066_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0416758 0.515835 0.54729 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0304282 0.434799

CAGE analysis