Hb_032920_050

Information

Type -
Description -
Location Contig32920: 43723-49991
Sequence    

Annotation

kegg
ID pop:POPTR_0009s09240g
description POPTRDRAFT_821289; ATP-dependent Clp protease proteolytic subunit family protein
nr
ID XP_012093109.1
description PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9XJ35
description ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1
trembl
ID A0A067LB65
description ATP-dependent Clp protease proteolytic subunit OS=Jatropha curcas GN=JCGZ_16316 PE=3 SV=1
Gene Ontology
ID GO:0009534
description atp-dependent clp protease proteolytic subunit-related protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34625: 43783-49997 , PASA_asmbl_34626: 48633-49141
cDNA
(Sanger)
(ID:Location)		 037_H20.ab1: 43783-47183

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032920_050 0.0 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
2 Hb_036790_080 0.0635276008 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
3 Hb_000130_320 0.0755077329 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
4 Hb_000613_110 0.079046257 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
5 Hb_000479_250 0.0809958308 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
6 Hb_003994_110 0.0832879228 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
7 Hb_007101_080 0.08394081 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
8 Hb_003020_030 0.0872803998 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
9 Hb_005253_030 0.0899205485 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_003106_190 0.0922238584 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
11 Hb_003544_160 0.0924597112 - - -
12 Hb_002758_010 0.0942793304 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
13 Hb_000749_090 0.0950732616 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000261_060 0.0956295752 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Jatropha curcas]
15 Hb_004003_040 0.0962509374 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
16 Hb_122968_010 0.0966729323 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
17 Hb_005731_160 0.0968194442 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_002897_090 0.0983540492 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000359_210 0.0993134908 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007922_020 0.100358283 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]

Gene co-expression network

sample Hb_032920_050 Hb_032920_050 Hb_036790_080 Hb_036790_080 Hb_032920_050--Hb_036790_080 Hb_000130_320 Hb_000130_320 Hb_032920_050--Hb_000130_320 Hb_000613_110 Hb_000613_110 Hb_032920_050--Hb_000613_110 Hb_000479_250 Hb_000479_250 Hb_032920_050--Hb_000479_250 Hb_003994_110 Hb_003994_110 Hb_032920_050--Hb_003994_110 Hb_007101_080 Hb_007101_080 Hb_032920_050--Hb_007101_080 Hb_005253_030 Hb_005253_030 Hb_036790_080--Hb_005253_030 Hb_000261_060 Hb_000261_060 Hb_036790_080--Hb_000261_060 Hb_003020_030 Hb_003020_030 Hb_036790_080--Hb_003020_030 Hb_036790_080--Hb_000130_320 Hb_001435_030 Hb_001435_030 Hb_036790_080--Hb_001435_030 Hb_000648_040 Hb_000648_040 Hb_000130_320--Hb_000648_040 Hb_002758_010 Hb_002758_010 Hb_000130_320--Hb_002758_010 Hb_001790_080 Hb_001790_080 Hb_000130_320--Hb_001790_080 Hb_000749_090 Hb_000749_090 Hb_000130_320--Hb_000749_090 Hb_001936_090 Hb_001936_090 Hb_000130_320--Hb_001936_090 Hb_005731_160 Hb_005731_160 Hb_000613_110--Hb_005731_160 Hb_002811_010 Hb_002811_010 Hb_000613_110--Hb_002811_010 Hb_001449_070 Hb_001449_070 Hb_000613_110--Hb_001449_070 Hb_003106_190 Hb_003106_190 Hb_000613_110--Hb_003106_190 Hb_000613_110--Hb_003994_110 Hb_009328_020 Hb_009328_020 Hb_000479_250--Hb_009328_020 Hb_006274_030 Hb_006274_030 Hb_000479_250--Hb_006274_030 Hb_001369_750 Hb_001369_750 Hb_000479_250--Hb_001369_750 Hb_001366_180 Hb_001366_180 Hb_000479_250--Hb_001366_180 Hb_006275_070 Hb_006275_070 Hb_000479_250--Hb_006275_070 Hb_003153_010 Hb_003153_010 Hb_000479_250--Hb_003153_010 Hb_003544_010 Hb_003544_010 Hb_003994_110--Hb_003544_010 Hb_003475_020 Hb_003475_020 Hb_003994_110--Hb_003475_020 Hb_001824_090 Hb_001824_090 Hb_003994_110--Hb_001824_090 Hb_003994_110--Hb_003106_190 Hb_000025_270 Hb_000025_270 Hb_007101_080--Hb_000025_270 Hb_007101_080--Hb_000613_110 Hb_004218_190 Hb_004218_190 Hb_007101_080--Hb_004218_190 Hb_007101_080--Hb_001824_090 Hb_007101_080--Hb_003994_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.338 17.1381 24.569 26.3048 21.8479 40.4547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.4766 22.7976 21.3997 30.4146 67.1686

CAGE analysis