Hb_032920_070

Information

Type -
Description -
Location Contig32920: 63956-72619
Sequence    

Annotation

kegg
ID vvi:100242874
description zinc finger protein-like 1
nr
ID XP_012093111.1
description PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
swissprot
ID A8X2R2
description Zinc finger protein-like 1 homolog OS=Caenorhabditis briggsae GN=CBG06644 PE=3 SV=1
trembl
ID A0A067LIN0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16318 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34628: 63795-71430 , PASA_asmbl_34629: 69562-69935 , PASA_asmbl_34630: 71855-72589
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032920_070 0.0 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
2 Hb_020390_010 0.0587386497 - - PREDICTED: expansin-A13 [Jatropha curcas]
3 Hb_002110_100 0.0652834952 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
4 Hb_000297_120 0.0704138075 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
5 Hb_002392_010 0.0758033215 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
6 Hb_015057_020 0.0760402694 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
7 Hb_000185_220 0.0762872695 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
8 Hb_006683_070 0.0860200918 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
9 Hb_006059_010 0.0870592706 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
10 Hb_002660_170 0.0873131623 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
11 Hb_066842_010 0.0887055828 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
12 Hb_002477_290 0.0892271115 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
13 Hb_005701_120 0.0930752904 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
14 Hb_005653_070 0.0942066486 - - K+ transport growth defect-like protein [Hevea brasiliensis]
15 Hb_000046_170 0.0942520204 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
16 Hb_003305_040 0.094863877 - - AP47/50p mRNA family protein [Populus trichocarpa]
17 Hb_005648_010 0.0970642662 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
18 Hb_001269_190 0.0977733209 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
19 Hb_001307_030 0.0982486473 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
20 Hb_015675_040 0.099281923 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_032920_070 Hb_032920_070 Hb_020390_010 Hb_020390_010 Hb_032920_070--Hb_020390_010 Hb_002110_100 Hb_002110_100 Hb_032920_070--Hb_002110_100 Hb_000297_120 Hb_000297_120 Hb_032920_070--Hb_000297_120 Hb_002392_010 Hb_002392_010 Hb_032920_070--Hb_002392_010 Hb_015057_020 Hb_015057_020 Hb_032920_070--Hb_015057_020 Hb_000185_220 Hb_000185_220 Hb_032920_070--Hb_000185_220 Hb_005701_120 Hb_005701_120 Hb_020390_010--Hb_005701_120 Hb_000288_020 Hb_000288_020 Hb_020390_010--Hb_000288_020 Hb_020390_010--Hb_002110_100 Hb_006683_070 Hb_006683_070 Hb_020390_010--Hb_006683_070 Hb_000046_170 Hb_000046_170 Hb_020390_010--Hb_000046_170 Hb_003305_040 Hb_003305_040 Hb_002110_100--Hb_003305_040 Hb_002110_100--Hb_002392_010 Hb_004158_020 Hb_004158_020 Hb_002110_100--Hb_004158_020 Hb_005653_070 Hb_005653_070 Hb_002110_100--Hb_005653_070 Hb_002110_100--Hb_005701_120 Hb_000297_120--Hb_000185_220 Hb_000297_120--Hb_006683_070 Hb_001307_030 Hb_001307_030 Hb_000297_120--Hb_001307_030 Hb_006059_010 Hb_006059_010 Hb_000297_120--Hb_006059_010 Hb_002660_170 Hb_002660_170 Hb_000297_120--Hb_002660_170 Hb_001946_390 Hb_001946_390 Hb_002392_010--Hb_001946_390 Hb_002392_010--Hb_000185_220 Hb_066842_010 Hb_066842_010 Hb_002392_010--Hb_066842_010 Hb_005601_040 Hb_005601_040 Hb_002392_010--Hb_005601_040 Hb_000210_060 Hb_000210_060 Hb_015057_020--Hb_000210_060 Hb_001728_040 Hb_001728_040 Hb_015057_020--Hb_001728_040 Hb_002477_290 Hb_002477_290 Hb_015057_020--Hb_002477_290 Hb_005276_040 Hb_005276_040 Hb_015057_020--Hb_005276_040 Hb_006538_090 Hb_006538_090 Hb_015057_020--Hb_006538_090 Hb_000185_220--Hb_006059_010 Hb_001195_400 Hb_001195_400 Hb_000185_220--Hb_001195_400 Hb_003206_110 Hb_003206_110 Hb_000185_220--Hb_003206_110 Hb_001080_300 Hb_001080_300 Hb_000185_220--Hb_001080_300 Hb_000309_050 Hb_000309_050 Hb_000185_220--Hb_000309_050 Hb_001975_150 Hb_001975_150 Hb_000185_220--Hb_001975_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.65359 3.90863 7.01249 14.3754 3.07117 3.34362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.66783 9.72522 6.4128 8.79859 11.3844

CAGE analysis