Hb_032920_080

Information

Type -
Description -
Location Contig32920: 67161-67538
Sequence    

Annotation

kegg
ID sot:102592947
description E3 ubiquitin protein ligase RIN2-like
nr
ID XP_010264784.1
description PREDICTED: uncharacterized protein LOC104602705 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID B9S4Y8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1392990 PE=4 SV=1
Gene Ontology
ID GO:0003676
description e3 ubiquitin protein ligase rin2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032920_080 0.0 - - PREDICTED: uncharacterized protein LOC104602705 [Nelumbo nucifera]
2 Hb_001814_090 0.0021659481 - - PREDICTED: uncharacterized protein LOC105636644 [Jatropha curcas]
3 Hb_060245_010 0.0025864332 - - -
4 Hb_001476_010 0.0039091047 - - hypothetical protein JCGZ_15669 [Jatropha curcas]
5 Hb_012120_010 0.0043996266 - - -
6 Hb_140406_010 0.0046242999 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
7 Hb_051719_020 0.0055206984 - - PREDICTED: toll/interleukin-1 receptor-like protein [Jatropha curcas]
8 Hb_027556_030 0.006487277 - - PREDICTED: pleiotropic drug resistance protein 1-like, partial [Gossypium raimondii]
9 Hb_001611_030 0.0070229623 - - -
10 Hb_002400_120 0.0073221996 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
11 Hb_003894_130 0.007948642 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
12 Hb_013405_120 0.0083501493 - - -
13 Hb_001621_080 0.0087035649 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
14 Hb_001740_010 0.0092071678 - - hypothetical protein JCGZ_18625 [Jatropha curcas]
15 Hb_001568_100 0.0103973011 - - hypothetical protein Csa_2G404850 [Cucumis sativus]
16 Hb_006124_020 0.0116812266 - - hypothetical protein JCGZ_13738 [Jatropha curcas]
17 Hb_002985_020 0.0121671635 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
18 Hb_000036_020 0.0121968663 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_007313_020 0.012809014 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_004332_060 0.0130432381 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_032920_080 Hb_032920_080 Hb_001814_090 Hb_001814_090 Hb_032920_080--Hb_001814_090 Hb_060245_010 Hb_060245_010 Hb_032920_080--Hb_060245_010 Hb_001476_010 Hb_001476_010 Hb_032920_080--Hb_001476_010 Hb_012120_010 Hb_012120_010 Hb_032920_080--Hb_012120_010 Hb_140406_010 Hb_140406_010 Hb_032920_080--Hb_140406_010 Hb_051719_020 Hb_051719_020 Hb_032920_080--Hb_051719_020 Hb_001814_090--Hb_060245_010 Hb_001814_090--Hb_001476_010 Hb_001814_090--Hb_012120_010 Hb_001814_090--Hb_140406_010 Hb_001814_090--Hb_051719_020 Hb_060245_010--Hb_001476_010 Hb_060245_010--Hb_012120_010 Hb_060245_010--Hb_140406_010 Hb_060245_010--Hb_051719_020 Hb_001476_010--Hb_012120_010 Hb_001476_010--Hb_140406_010 Hb_001476_010--Hb_051719_020 Hb_027556_030 Hb_027556_030 Hb_001476_010--Hb_027556_030 Hb_012120_010--Hb_140406_010 Hb_012120_010--Hb_051719_020 Hb_012120_010--Hb_027556_030 Hb_140406_010--Hb_051719_020 Hb_140406_010--Hb_027556_030 Hb_001611_030 Hb_001611_030 Hb_140406_010--Hb_001611_030 Hb_051719_020--Hb_027556_030 Hb_051719_020--Hb_001611_030 Hb_002400_120 Hb_002400_120 Hb_051719_020--Hb_002400_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0828677 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0758941 0

CAGE analysis