Hb_032927_010

Information

Type -
Description -
Location Contig32927: 2712-3221
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032927_010 0.0 - - -
2 Hb_000812_040 0.0711247726 - - zinc finger family protein [Populus trichocarpa]
3 Hb_067776_010 0.0790006217 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
4 Hb_006502_080 0.0867208334 - - -
5 Hb_007188_020 0.1118382832 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
6 Hb_152554_010 0.1289641657 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
7 Hb_136731_010 0.1320916535 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
8 Hb_000656_100 0.1322471145 - - PREDICTED: uncharacterized protein LOC105633651 [Jatropha curcas]
9 Hb_000648_030 0.1324649066 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
10 Hb_007012_020 0.1396092158 - - hypothetical protein POPTR_0005s11940g [Populus trichocarpa]
11 Hb_106005_010 0.143123173 - - EG5651 [Manihot esculenta]
12 Hb_007441_270 0.1437443545 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
13 Hb_005085_030 0.1467985987 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
14 Hb_000001_040 0.1477693407 - - unnamed protein product [Coffea canephora]
15 Hb_076875_020 0.1490617926 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
16 Hb_002007_180 0.1514766908 - - PREDICTED: uncharacterized protein LOC105647525 [Jatropha curcas]
17 Hb_009543_030 0.1542271526 - - prefoldin subunit 1 [Jatropha curcas]
18 Hb_007317_060 0.1573498986 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
19 Hb_140291_010 0.1618318337 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
20 Hb_002197_030 0.1618872874 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_032927_010 Hb_032927_010 Hb_000812_040 Hb_000812_040 Hb_032927_010--Hb_000812_040 Hb_067776_010 Hb_067776_010 Hb_032927_010--Hb_067776_010 Hb_006502_080 Hb_006502_080 Hb_032927_010--Hb_006502_080 Hb_007188_020 Hb_007188_020 Hb_032927_010--Hb_007188_020 Hb_152554_010 Hb_152554_010 Hb_032927_010--Hb_152554_010 Hb_136731_010 Hb_136731_010 Hb_032927_010--Hb_136731_010 Hb_000812_040--Hb_067776_010 Hb_000812_040--Hb_152554_010 Hb_000812_040--Hb_006502_080 Hb_140291_010 Hb_140291_010 Hb_000812_040--Hb_140291_010 Hb_022250_130 Hb_022250_130 Hb_000812_040--Hb_022250_130 Hb_007441_270 Hb_007441_270 Hb_067776_010--Hb_007441_270 Hb_000648_030 Hb_000648_030 Hb_067776_010--Hb_000648_030 Hb_012675_070 Hb_012675_070 Hb_067776_010--Hb_012675_070 Hb_000003_730 Hb_000003_730 Hb_067776_010--Hb_000003_730 Hb_007012_020 Hb_007012_020 Hb_006502_080--Hb_007012_020 Hb_006502_080--Hb_136731_010 Hb_006502_080--Hb_067776_010 Hb_000329_770 Hb_000329_770 Hb_006502_080--Hb_000329_770 Hb_007188_020--Hb_152554_010 Hb_116632_010 Hb_116632_010 Hb_007188_020--Hb_116632_010 Hb_000001_040 Hb_000001_040 Hb_007188_020--Hb_000001_040 Hb_007188_020--Hb_000812_040 Hb_005085_030 Hb_005085_030 Hb_007188_020--Hb_005085_030 Hb_006487_060 Hb_006487_060 Hb_152554_010--Hb_006487_060 Hb_003861_040 Hb_003861_040 Hb_152554_010--Hb_003861_040 Hb_001377_180 Hb_001377_180 Hb_152554_010--Hb_001377_180 Hb_000176_120 Hb_000176_120 Hb_152554_010--Hb_000176_120 Hb_136731_010--Hb_001377_180 Hb_005054_070 Hb_005054_070 Hb_136731_010--Hb_005054_070 Hb_000155_180 Hb_000155_180 Hb_136731_010--Hb_000155_180 Hb_136731_010--Hb_000812_040 Hb_005367_010 Hb_005367_010 Hb_136731_010--Hb_005367_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.5539 1.00815 1.09604 2.54267 1.40418 10.6578
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.03133 4.89425 2.17286 2.67994 0.717453

CAGE analysis