Hb_032969_030

Information

Type -
Description -
Location Contig32969: 29007-29555
Sequence    

Annotation

kegg
ID rcu:RCOM_0851860
description calmodulin binding protein, putative
nr
ID XP_002517378.1
description calmodulin binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RUD3
description Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_0851860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032969_030 0.0 - - calmodulin binding protein, putative [Ricinus communis]
2 Hb_000300_390 0.0782194963 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
3 Hb_003581_220 0.0819163793 - - unnamed protein product [Vitis vinifera]
4 Hb_005663_120 0.0863366555 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
5 Hb_000976_250 0.0927480388 - - -
6 Hb_001785_040 0.0938641004 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
7 Hb_001157_010 0.0940796378 - - deoxyhypusine synthase, putative [Ricinus communis]
8 Hb_002603_150 0.0950602176 - - PREDICTED: protein yippee-like [Jatropha curcas]
9 Hb_120823_010 0.0965224023 - - -
10 Hb_001314_040 0.0987955333 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
11 Hb_007218_150 0.1007020186 - - RecName: Full=Profilin-3; AltName: Full=Pollen allergen Hev b 8.0201; AltName: Allergen=Hev b 8.0201 [Hevea brasiliensis]
12 Hb_012539_020 0.1020223568 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
13 Hb_001232_140 0.1022195238 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
14 Hb_000905_180 0.1024118301 - - 60S ribosomal protein L31A [Hevea brasiliensis]
15 Hb_005474_060 0.1030679443 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
16 Hb_020419_020 0.1040459983 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
17 Hb_000012_100 0.1055618547 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
18 Hb_001135_210 0.1057234392 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
19 Hb_000236_150 0.1067404638 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
20 Hb_050806_010 0.1068429103 - - PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]

Gene co-expression network

sample Hb_032969_030 Hb_032969_030 Hb_000300_390 Hb_000300_390 Hb_032969_030--Hb_000300_390 Hb_003581_220 Hb_003581_220 Hb_032969_030--Hb_003581_220 Hb_005663_120 Hb_005663_120 Hb_032969_030--Hb_005663_120 Hb_000976_250 Hb_000976_250 Hb_032969_030--Hb_000976_250 Hb_001785_040 Hb_001785_040 Hb_032969_030--Hb_001785_040 Hb_001157_010 Hb_001157_010 Hb_032969_030--Hb_001157_010 Hb_002316_120 Hb_002316_120 Hb_000300_390--Hb_002316_120 Hb_000789_110 Hb_000789_110 Hb_000300_390--Hb_000789_110 Hb_000300_390--Hb_005663_120 Hb_012539_020 Hb_012539_020 Hb_000300_390--Hb_012539_020 Hb_120823_010 Hb_120823_010 Hb_000300_390--Hb_120823_010 Hb_002603_150 Hb_002603_150 Hb_003581_220--Hb_002603_150 Hb_000530_070 Hb_000530_070 Hb_003581_220--Hb_000530_070 Hb_010402_050 Hb_010402_050 Hb_003581_220--Hb_010402_050 Hb_001846_070 Hb_001846_070 Hb_003581_220--Hb_001846_070 Hb_001076_020 Hb_001076_020 Hb_003581_220--Hb_001076_020 Hb_005663_120--Hb_012539_020 Hb_005663_120--Hb_002316_120 Hb_005527_040 Hb_005527_040 Hb_005663_120--Hb_005527_040 Hb_000389_080 Hb_000389_080 Hb_005663_120--Hb_000389_080 Hb_005914_200 Hb_005914_200 Hb_000976_250--Hb_005914_200 Hb_002518_290 Hb_002518_290 Hb_000976_250--Hb_002518_290 Hb_000976_250--Hb_012539_020 Hb_005474_060 Hb_005474_060 Hb_000976_250--Hb_005474_060 Hb_000976_250--Hb_000300_390 Hb_001604_030 Hb_001604_030 Hb_001785_040--Hb_001604_030 Hb_000260_200 Hb_000260_200 Hb_001785_040--Hb_000260_200 Hb_001785_040--Hb_002603_150 Hb_000012_100 Hb_000012_100 Hb_001785_040--Hb_000012_100 Hb_089100_020 Hb_089100_020 Hb_001785_040--Hb_089100_020 Hb_001314_040 Hb_001314_040 Hb_001157_010--Hb_001314_040 Hb_003326_020 Hb_003326_020 Hb_001157_010--Hb_003326_020 Hb_002876_120 Hb_002876_120 Hb_001157_010--Hb_002876_120 Hb_000239_030 Hb_000239_030 Hb_001157_010--Hb_000239_030 Hb_006569_100 Hb_006569_100 Hb_001157_010--Hb_006569_100 Hb_001157_010--Hb_000530_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.9832 11.4708 18.6529 32.876 14.073 29.2779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
107.495 171.111 105.865 16.7846 21.8072

CAGE analysis