Hb_032972_010

Information

Type -
Description -
Location Contig32972: 2642-3698
Sequence    

Annotation

kegg
ID rcu:RCOM_1168990
description Glycolipid transfer protein, putative
nr
ID XP_002528828.1
description Glycolipid transfer protein, putative [Ricinus communis]
swissprot
ID O22797
description Glycolipid transfer protein 1 OS=Arabidopsis thaliana GN=GLTP1 PE=2 SV=1
trembl
ID B9SS59
description Glycolipid transfer protein, putative OS=Ricinus communis GN=RCOM_1168990 PE=4 SV=1
Gene Ontology
ID GO:0005829
description pleckstrin homology domain-containing family a member 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34646: 2829-3231
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032972_010 0.0 - - Glycolipid transfer protein, putative [Ricinus communis]
2 Hb_000260_280 0.1279517492 - - auxin:hydrogen symporter, putative [Ricinus communis]
3 Hb_175933_010 0.1441056536 - - NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
4 Hb_000683_100 0.1665624569 - - hypothetical protein JCGZ_22137 [Jatropha curcas]
5 Hb_000027_210 0.1771184424 - - Os01g0689300, partial [Oryza sativa Japonica Group]
6 Hb_001208_030 0.1794937958 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001208_040 0.1835827078 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]
8 Hb_148130_020 0.1837418749 - - -
9 Hb_001946_310 0.185203001 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
10 Hb_000062_090 0.1857718094 - - PREDICTED: uncharacterized protein LOC105644743 isoform X2 [Jatropha curcas]
11 Hb_006903_030 0.1871130867 - - PREDICTED: uncharacterized protein LOC105640666 [Jatropha curcas]
12 Hb_048476_060 0.1885743012 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
13 Hb_012362_030 0.1893701604 - - PREDICTED: GPI-anchored protein LORELEI-like [Populus euphratica]
14 Hb_000796_020 0.1900118533 - - ADP-ribosylation factor [Phaseolus vulgaris]
15 Hb_000010_310 0.1926451393 - - PREDICTED: probable pectate lyase 18 [Populus euphratica]
16 Hb_009898_040 0.1933943814 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002781_050 0.1936344863 - - cytochrome B5 isoform 1, putative [Ricinus communis]
18 Hb_000086_290 0.1936489485 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
19 Hb_126757_010 0.1944664981 - - protein phosphatase 2c, putative [Ricinus communis]
20 Hb_025466_020 0.1973638465 - - tubulin beta-6 [Brassica oleracea var. italica]

Gene co-expression network

sample Hb_032972_010 Hb_032972_010 Hb_000260_280 Hb_000260_280 Hb_032972_010--Hb_000260_280 Hb_175933_010 Hb_175933_010 Hb_032972_010--Hb_175933_010 Hb_000683_100 Hb_000683_100 Hb_032972_010--Hb_000683_100 Hb_000027_210 Hb_000027_210 Hb_032972_010--Hb_000027_210 Hb_001208_030 Hb_001208_030 Hb_032972_010--Hb_001208_030 Hb_001208_040 Hb_001208_040 Hb_032972_010--Hb_001208_040 Hb_025466_020 Hb_025466_020 Hb_000260_280--Hb_025466_020 Hb_000210_100 Hb_000210_100 Hb_000260_280--Hb_000210_100 Hb_001454_100 Hb_001454_100 Hb_000260_280--Hb_001454_100 Hb_029920_020 Hb_029920_020 Hb_000260_280--Hb_029920_020 Hb_006903_030 Hb_006903_030 Hb_000260_280--Hb_006903_030 Hb_000240_120 Hb_000240_120 Hb_175933_010--Hb_000240_120 Hb_175933_010--Hb_001208_030 Hb_008206_100 Hb_008206_100 Hb_175933_010--Hb_008206_100 Hb_175933_010--Hb_001208_040 Hb_001969_020 Hb_001969_020 Hb_175933_010--Hb_001969_020 Hb_000683_100--Hb_001969_020 Hb_000796_020 Hb_000796_020 Hb_000683_100--Hb_000796_020 Hb_002960_130 Hb_002960_130 Hb_000683_100--Hb_002960_130 Hb_148130_020 Hb_148130_020 Hb_000683_100--Hb_148130_020 Hb_010577_010 Hb_010577_010 Hb_000683_100--Hb_010577_010 Hb_091349_010 Hb_091349_010 Hb_000683_100--Hb_091349_010 Hb_002781_050 Hb_002781_050 Hb_000027_210--Hb_002781_050 Hb_001148_090 Hb_001148_090 Hb_000027_210--Hb_001148_090 Hb_001148_100 Hb_001148_100 Hb_000027_210--Hb_001148_100 Hb_002539_040 Hb_002539_040 Hb_000027_210--Hb_002539_040 Hb_002151_060 Hb_002151_060 Hb_000027_210--Hb_002151_060 Hb_001486_350 Hb_001486_350 Hb_000027_210--Hb_001486_350 Hb_001208_030--Hb_001208_040 Hb_145880_020 Hb_145880_020 Hb_001208_030--Hb_145880_020 Hb_002154_110 Hb_002154_110 Hb_001208_030--Hb_002154_110 Hb_008642_030 Hb_008642_030 Hb_001208_030--Hb_008642_030 Hb_076219_010 Hb_076219_010 Hb_001208_030--Hb_076219_010 Hb_001208_040--Hb_002960_130 Hb_000217_020 Hb_000217_020 Hb_001208_040--Hb_000217_020 Hb_000016_060 Hb_000016_060 Hb_001208_040--Hb_000016_060 Hb_006452_110 Hb_006452_110 Hb_001208_040--Hb_006452_110 Hb_007390_020 Hb_007390_020 Hb_001208_040--Hb_007390_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.93488 7.03127 22.8932 167.711 4.88573 10.7322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.8477 45.9968 35.5914 58.7392 19.7662

CAGE analysis