Hb_032990_010

Information

Type -
Description -
Location Contig32990: 8153-24074
Sequence    

Annotation

kegg
ID pop:POPTR_0002s23490g
description POPTRDRAFT_552845; hypothetical protein
nr
ID XP_012072599.1
description PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
swissprot
ID Q5XVJ4
description Fanconi-associated nuclease 1 homolog OS=Arabidopsis thaliana GN=At1g48360 PE=2 SV=2
trembl
ID B9GUA4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s23490g PE=4 SV=2
Gene Ontology
ID GO:0003677
description fanconi-associated nuclease 1 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34672: 7798-8339 , PASA_asmbl_34673: 8583-16019 , PASA_asmbl_34674: 21347-21651 , PASA_asmbl_34675: 21681-23284
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032990_010 0.0 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
2 Hb_007062_040 0.045192145 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
3 Hb_005460_050 0.0524243443 - - COR413-PM2, putative [Ricinus communis]
4 Hb_000737_030 0.0565943121 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
5 Hb_003038_120 0.0658858607 - - rer1 protein, putative [Ricinus communis]
6 Hb_000046_570 0.0674936793 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
7 Hb_004586_060 0.072222191 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
8 Hb_004020_040 0.072318907 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
9 Hb_001405_210 0.0734171028 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
10 Hb_001377_310 0.0735104668 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
11 Hb_000261_230 0.0759725334 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
12 Hb_003897_040 0.0767987237 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
13 Hb_003096_060 0.0778298595 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
14 Hb_000035_110 0.0783478494 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
15 Hb_000313_220 0.079470871 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
16 Hb_000527_010 0.0802547379 - - katanin P80 subunit, putative [Ricinus communis]
17 Hb_002073_190 0.0805023128 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
18 Hb_000933_010 0.0824191405 - - -
19 Hb_001856_180 0.082464962 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
20 Hb_008568_020 0.0842516607 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]

Gene co-expression network

sample Hb_032990_010 Hb_032990_010 Hb_007062_040 Hb_007062_040 Hb_032990_010--Hb_007062_040 Hb_005460_050 Hb_005460_050 Hb_032990_010--Hb_005460_050 Hb_000737_030 Hb_000737_030 Hb_032990_010--Hb_000737_030 Hb_003038_120 Hb_003038_120 Hb_032990_010--Hb_003038_120 Hb_000046_570 Hb_000046_570 Hb_032990_010--Hb_000046_570 Hb_004586_060 Hb_004586_060 Hb_032990_010--Hb_004586_060 Hb_007062_040--Hb_000046_570 Hb_007062_040--Hb_004586_060 Hb_001856_180 Hb_001856_180 Hb_007062_040--Hb_001856_180 Hb_001405_210 Hb_001405_210 Hb_007062_040--Hb_001405_210 Hb_007062_040--Hb_005460_050 Hb_001377_310 Hb_001377_310 Hb_005460_050--Hb_001377_310 Hb_000933_010 Hb_000933_010 Hb_005460_050--Hb_000933_010 Hb_001635_160 Hb_001635_160 Hb_005460_050--Hb_001635_160 Hb_003897_040 Hb_003897_040 Hb_005460_050--Hb_003897_040 Hb_001002_060 Hb_001002_060 Hb_000737_030--Hb_001002_060 Hb_001005_030 Hb_001005_030 Hb_000737_030--Hb_001005_030 Hb_000737_030--Hb_004586_060 Hb_000373_080 Hb_000373_080 Hb_000737_030--Hb_000373_080 Hb_000737_030--Hb_001377_310 Hb_000776_100 Hb_000776_100 Hb_003038_120--Hb_000776_100 Hb_003038_120--Hb_003897_040 Hb_003096_060 Hb_003096_060 Hb_003038_120--Hb_003096_060 Hb_003038_120--Hb_005460_050 Hb_006588_070 Hb_006588_070 Hb_003038_120--Hb_006588_070 Hb_000046_570--Hb_004586_060 Hb_007248_030 Hb_007248_030 Hb_000046_570--Hb_007248_030 Hb_000390_250 Hb_000390_250 Hb_000046_570--Hb_000390_250 Hb_000046_570--Hb_001405_210 Hb_003912_040 Hb_003912_040 Hb_000046_570--Hb_003912_040 Hb_004586_060--Hb_007248_030 Hb_004586_060--Hb_001377_310 Hb_000702_090 Hb_000702_090 Hb_004586_060--Hb_000702_090 Hb_004586_060--Hb_005460_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.78601 1.68391 1.98787 2.38768 1.60925 1.80022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.23222 1.27793 0.581545 1.51963 1.34179

CAGE analysis