Hb_032990_020

Information

Type -
Description -
Location Contig32990: 8544-14922
Sequence    

Annotation

kegg
ID rcu:RCOM_1749150
description hypothetical protein
nr
ID XP_002518227.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5SNL7
description Fanconi-associated nuclease 1 homolog OS=Oryza sativa subsp. japonica GN=Os06g0171800 PE=3 SV=1
trembl
ID B9RWV8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1749150 PE=4 SV=1
Gene Ontology
ID GO:0003676
description fanconi-associated nuclease 1 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032990_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005548_030 0.2123370139 - - hypothetical protein JCGZ_05606 [Jatropha curcas]
3 Hb_000820_160 0.2191192234 - - -
4 Hb_135569_010 0.2656558968 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
5 Hb_078160_010 0.2661154283 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
6 Hb_001767_040 0.2674025463 - - dehydroascorbate reductase, putative [Ricinus communis]
7 Hb_000181_410 0.2698216488 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005568_100 0.2771728307 - - vacuolar proton ATPase a3-like protein [Medicago truncatula]
9 Hb_014919_020 0.2837141536 - - -
10 Hb_131864_030 0.2845255486 transcription factor TF Family: C2H2 transcription factor, putative [Ricinus communis]
11 Hb_160233_020 0.2869224608 - - -
12 Hb_161023_010 0.2870598217 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
13 Hb_004994_130 0.2887851161 transcription factor TF Family: MYB PREDICTED: myb-like protein M [Jatropha curcas]
14 Hb_007603_020 0.2895274844 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
15 Hb_003119_050 0.291008563 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
16 Hb_000107_470 0.2917784848 - - cellulose synthase, putative [Ricinus communis]
17 Hb_006545_020 0.2979772042 - - multicopper oxidase, putative [Ricinus communis]
18 Hb_007592_020 0.2984877343 - - acyltransferase, putative [Ricinus communis]
19 Hb_005883_070 0.2997225894 - - PREDICTED: probable myosin-binding protein 5 [Jatropha curcas]
20 Hb_007423_030 0.3067781065 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_032990_020 Hb_032990_020 Hb_005548_030 Hb_005548_030 Hb_032990_020--Hb_005548_030 Hb_000820_160 Hb_000820_160 Hb_032990_020--Hb_000820_160 Hb_135569_010 Hb_135569_010 Hb_032990_020--Hb_135569_010 Hb_078160_010 Hb_078160_010 Hb_032990_020--Hb_078160_010 Hb_001767_040 Hb_001767_040 Hb_032990_020--Hb_001767_040 Hb_000181_410 Hb_000181_410 Hb_032990_020--Hb_000181_410 Hb_000692_120 Hb_000692_120 Hb_005548_030--Hb_000692_120 Hb_003119_050 Hb_003119_050 Hb_005548_030--Hb_003119_050 Hb_001196_080 Hb_001196_080 Hb_005548_030--Hb_001196_080 Hb_005000_140 Hb_005000_140 Hb_005548_030--Hb_005000_140 Hb_074184_010 Hb_074184_010 Hb_005548_030--Hb_074184_010 Hb_055488_020 Hb_055488_020 Hb_005548_030--Hb_055488_020 Hb_001016_140 Hb_001016_140 Hb_000820_160--Hb_001016_140 Hb_131864_030 Hb_131864_030 Hb_000820_160--Hb_131864_030 Hb_000413_150 Hb_000413_150 Hb_000820_160--Hb_000413_150 Hb_115116_010 Hb_115116_010 Hb_000820_160--Hb_115116_010 Hb_012092_100 Hb_012092_100 Hb_000820_160--Hb_012092_100 Hb_135569_010--Hb_078160_010 Hb_170516_010 Hb_170516_010 Hb_135569_010--Hb_170516_010 Hb_002217_410 Hb_002217_410 Hb_135569_010--Hb_002217_410 Hb_135569_010--Hb_005548_030 Hb_135569_010--Hb_115116_010 Hb_000540_010 Hb_000540_010 Hb_078160_010--Hb_000540_010 Hb_001079_030 Hb_001079_030 Hb_078160_010--Hb_001079_030 Hb_007423_030 Hb_007423_030 Hb_078160_010--Hb_007423_030 Hb_078160_010--Hb_005548_030 Hb_006721_070 Hb_006721_070 Hb_078160_010--Hb_006721_070 Hb_007603_020 Hb_007603_020 Hb_001767_040--Hb_007603_020 Hb_000997_150 Hb_000997_150 Hb_001767_040--Hb_000997_150 Hb_000189_430 Hb_000189_430 Hb_001767_040--Hb_000189_430 Hb_001269_310 Hb_001269_310 Hb_001767_040--Hb_001269_310 Hb_001195_190 Hb_001195_190 Hb_001767_040--Hb_001195_190 Hb_097646_010 Hb_097646_010 Hb_001767_040--Hb_097646_010 Hb_000107_470 Hb_000107_470 Hb_000181_410--Hb_000107_470 Hb_000181_410--Hb_007603_020 Hb_004994_130 Hb_004994_130 Hb_000181_410--Hb_004994_130 Hb_000904_130 Hb_000904_130 Hb_000181_410--Hb_000904_130 Hb_000152_510 Hb_000152_510 Hb_000181_410--Hb_000152_510 Hb_163839_010 Hb_163839_010 Hb_000181_410--Hb_163839_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.129697 0.294914 0.292263 0.162526 0.192527 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.102844 0.021967 0

CAGE analysis