Hb_033006_040

Information

Type -
Description -
Location Contig33006: 54900-58263
Sequence    

Annotation

kegg
ID rcu:RCOM_0443450
description sulfate transporter, putative
nr
ID XP_002534156.1
description sulfate transporter, putative [Ricinus communis]
swissprot
ID P53392
description High affinity sulfate transporter 2 OS=Stylosanthes hamata GN=ST2 PE=2 SV=1
trembl
ID B9T7D7
description Sulfate transporter, putative OS=Ricinus communis GN=RCOM_0443450 PE=4 SV=1
Gene Ontology
ID GO:0005886
description sulfate transporter -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34712: 56723-57348
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033006_040 0.0 - - sulfate transporter, putative [Ricinus communis]
2 Hb_000380_040 0.1057092586 - - bel1 homeotic protein, putative [Ricinus communis]
3 Hb_001454_340 0.1076603768 - - ATDI21 [Manihot esculenta]
4 Hb_009083_080 0.1252851555 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001157_150 0.1269380825 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
6 Hb_000185_060 0.1282825893 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
7 Hb_000300_570 0.1344609553 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
8 Hb_000031_130 0.1389125447 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
9 Hb_000077_470 0.1404537114 - - PREDICTED: anthranilate N-methyltransferase-like [Jatropha curcas]
10 Hb_000236_360 0.1410957543 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Prunus mume]
11 Hb_181092_010 0.1429983985 - - unnamed protein product [Vitis vinifera]
12 Hb_001269_020 0.1476853317 - - PREDICTED: beta-Amyrin Synthase 2-like [Vitis vinifera]
13 Hb_001953_130 0.1522153516 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
14 Hb_006711_010 0.1547853336 - - cytoplasmic dynein light chain, putative [Ricinus communis]
15 Hb_006418_010 0.155410918 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
16 Hb_186298_010 0.1557568255 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_085327_010 0.1559973958 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
18 Hb_002677_010 0.1579342975 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2 [Populus euphratica]
19 Hb_000116_390 0.1579654343 - - Mlo protein [Hevea brasiliensis]
20 Hb_004656_020 0.1587522603 - - EF hand domain-containing protein, variant [Neurospora crassa OR74A]

Gene co-expression network

sample Hb_033006_040 Hb_033006_040 Hb_000380_040 Hb_000380_040 Hb_033006_040--Hb_000380_040 Hb_001454_340 Hb_001454_340 Hb_033006_040--Hb_001454_340 Hb_009083_080 Hb_009083_080 Hb_033006_040--Hb_009083_080 Hb_001157_150 Hb_001157_150 Hb_033006_040--Hb_001157_150 Hb_000185_060 Hb_000185_060 Hb_033006_040--Hb_000185_060 Hb_000300_570 Hb_000300_570 Hb_033006_040--Hb_000300_570 Hb_000236_360 Hb_000236_360 Hb_000380_040--Hb_000236_360 Hb_000380_040--Hb_001157_150 Hb_000380_040--Hb_009083_080 Hb_181092_010 Hb_181092_010 Hb_000380_040--Hb_181092_010 Hb_000380_040--Hb_000185_060 Hb_006711_010 Hb_006711_010 Hb_001454_340--Hb_006711_010 Hb_001454_340--Hb_000380_040 Hb_050484_010 Hb_050484_010 Hb_001454_340--Hb_050484_010 Hb_003119_070 Hb_003119_070 Hb_001454_340--Hb_003119_070 Hb_002007_230 Hb_002007_230 Hb_001454_340--Hb_002007_230 Hb_004656_020 Hb_004656_020 Hb_009083_080--Hb_004656_020 Hb_003253_060 Hb_003253_060 Hb_009083_080--Hb_003253_060 Hb_006418_010 Hb_006418_010 Hb_009083_080--Hb_006418_010 Hb_009083_080--Hb_181092_010 Hb_000077_470 Hb_000077_470 Hb_009083_080--Hb_000077_470 Hb_001157_150--Hb_000236_360 Hb_001157_150--Hb_009083_080 Hb_001157_150--Hb_000077_470 Hb_002003_020 Hb_002003_020 Hb_001157_150--Hb_002003_020 Hb_000334_250 Hb_000334_250 Hb_001157_150--Hb_000334_250 Hb_008616_020 Hb_008616_020 Hb_000185_060--Hb_008616_020 Hb_002677_010 Hb_002677_010 Hb_000185_060--Hb_002677_010 Hb_032582_010 Hb_032582_010 Hb_000185_060--Hb_032582_010 Hb_008053_070 Hb_008053_070 Hb_000185_060--Hb_008053_070 Hb_000185_060--Hb_181092_010 Hb_001376_040 Hb_001376_040 Hb_000185_060--Hb_001376_040 Hb_012053_030 Hb_012053_030 Hb_000300_570--Hb_012053_030 Hb_000265_010 Hb_000265_010 Hb_000300_570--Hb_000265_010 Hb_003086_200 Hb_003086_200 Hb_000300_570--Hb_003086_200 Hb_000300_570--Hb_002007_230 Hb_001489_030 Hb_001489_030 Hb_000300_570--Hb_001489_030 Hb_000300_570--Hb_000185_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.714605 0.00707673 0.0873109 0 0.0396107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.842976 0

CAGE analysis