Hb_033045_010

Information

Type -
Description -
Location Contig33045: 25109-31292
Sequence    

Annotation

kegg
ID rcu:RCOM_1083740
description copine, putative
nr
ID XP_002515058.1
description copine, putative [Ricinus communis]
swissprot
ID Q9LY87
description E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1
trembl
ID B9RMT9
description Copine, putative OS=Ricinus communis GN=RCOM_1083740 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase rglg2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34736: 24964-25486 , PASA_asmbl_34737: 30827-31527 , PASA_asmbl_34738: 30827-34404
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033045_010 0.0 - - copine, putative [Ricinus communis]
2 Hb_000265_020 0.078051568 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
3 Hb_006970_150 0.1040136004 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
4 Hb_063523_010 0.1110336508 - - -
5 Hb_000489_020 0.1166073925 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
6 Hb_003337_050 0.1167831292 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
7 Hb_031862_020 0.1246187758 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
8 Hb_107543_010 0.1246898924 - - Cysteine-rich RLK 10, putative [Theobroma cacao]
9 Hb_002518_270 0.128727666 - - glycogen phosphorylase, putative [Ricinus communis]
10 Hb_000359_280 0.130674772 - - hypothetical protein OsI_15300 [Oryza sativa Indica Group]
11 Hb_075449_040 0.1307139007 - - PREDICTED: meiotic recombination protein SPO11-1 [Jatropha curcas]
12 Hb_000008_080 0.1313455398 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000002_100 0.1348126212 - - phosphate transporter [Manihot esculenta]
14 Hb_009803_030 0.1359857464 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
15 Hb_001102_270 0.1361434325 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
16 Hb_012018_020 0.1383583064 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Eucalyptus grandis]
17 Hb_002085_070 0.1413555311 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
18 Hb_046101_010 0.1452396422 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
19 Hb_000521_290 0.1457610604 - - hypothetical protein POPTR_0001s23530g [Populus trichocarpa]
20 Hb_007420_010 0.1458694288 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_033045_010 Hb_033045_010 Hb_000265_020 Hb_000265_020 Hb_033045_010--Hb_000265_020 Hb_006970_150 Hb_006970_150 Hb_033045_010--Hb_006970_150 Hb_063523_010 Hb_063523_010 Hb_033045_010--Hb_063523_010 Hb_000489_020 Hb_000489_020 Hb_033045_010--Hb_000489_020 Hb_003337_050 Hb_003337_050 Hb_033045_010--Hb_003337_050 Hb_031862_020 Hb_031862_020 Hb_033045_010--Hb_031862_020 Hb_000265_020--Hb_000489_020 Hb_002085_070 Hb_002085_070 Hb_000265_020--Hb_002085_070 Hb_000265_020--Hb_006970_150 Hb_000521_290 Hb_000521_290 Hb_000265_020--Hb_000521_290 Hb_012018_020 Hb_012018_020 Hb_000265_020--Hb_012018_020 Hb_000075_110 Hb_000075_110 Hb_006970_150--Hb_000075_110 Hb_002518_270 Hb_002518_270 Hb_006970_150--Hb_002518_270 Hb_000120_070 Hb_000120_070 Hb_006970_150--Hb_000120_070 Hb_008948_080 Hb_008948_080 Hb_006970_150--Hb_008948_080 Hb_187991_010 Hb_187991_010 Hb_063523_010--Hb_187991_010 Hb_000359_280 Hb_000359_280 Hb_063523_010--Hb_000359_280 Hb_001102_270 Hb_001102_270 Hb_063523_010--Hb_001102_270 Hb_107809_010 Hb_107809_010 Hb_063523_010--Hb_107809_010 Hb_063523_010--Hb_031862_020 Hb_001355_110 Hb_001355_110 Hb_000489_020--Hb_001355_110 Hb_005333_100 Hb_005333_100 Hb_000489_020--Hb_005333_100 Hb_001623_470 Hb_001623_470 Hb_000489_020--Hb_001623_470 Hb_152718_010 Hb_152718_010 Hb_000489_020--Hb_152718_010 Hb_001769_030 Hb_001769_030 Hb_000489_020--Hb_001769_030 Hb_003337_050--Hb_002518_270 Hb_009803_030 Hb_009803_030 Hb_003337_050--Hb_009803_030 Hb_003337_050--Hb_006970_150 Hb_001946_060 Hb_001946_060 Hb_003337_050--Hb_001946_060 Hb_003337_050--Hb_000265_020 Hb_167272_010 Hb_167272_010 Hb_031862_020--Hb_167272_010 Hb_000237_070 Hb_000237_070 Hb_031862_020--Hb_000237_070 Hb_000501_040 Hb_000501_040 Hb_031862_020--Hb_000501_040 Hb_000085_220 Hb_000085_220 Hb_031862_020--Hb_000085_220 Hb_000382_030 Hb_000382_030 Hb_031862_020--Hb_000382_030 Hb_007420_010 Hb_007420_010 Hb_031862_020--Hb_007420_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.09396 2.37997 0.806229 0 0.0293387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0254001 0 0 3.526 1.43122

CAGE analysis