Hb_033066_030

Information

Type -
Description -
Location Contig33066: 13663-26373
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa016115mg
description hypothetical protein
nr
ID XP_007224141.1
description hypothetical protein PRUPE_ppa016115mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5Y103
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016115mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033066_030 0.0 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
2 Hb_002060_040 0.0007593124 - - putative polyprotein [Oryza sativa Japonica Group]
3 Hb_031866_030 0.0146210402 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo]
4 Hb_009152_030 0.0524040154 - - hypothetical protein L484_026849 [Morus notabilis]
5 Hb_000009_010 0.1147073665 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
6 Hb_001629_040 0.1493643103 - - hypothetical protein POPTR_0001s41630g [Populus trichocarpa]
7 Hb_000789_140 0.169307303 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
8 Hb_003567_020 0.1799791971 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000155_240 0.2134438635 - - PREDICTED: uncharacterized protein LOC104888642 [Beta vulgaris subsp. vulgaris]
10 Hb_180367_010 0.2192680037 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
11 Hb_006474_010 0.2234493804 - - hypothetical protein VITISV_032357 [Vitis vinifera]
12 Hb_003739_040 0.2241322519 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
13 Hb_128193_010 0.2292655033 - - PREDICTED: uncharacterized protein LOC103699534, partial [Phoenix dactylifera]
14 Hb_121041_010 0.2379441461 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
15 Hb_017604_030 0.2439108731 - - -
16 Hb_038508_010 0.2509296827 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
17 Hb_000646_030 0.2589390667 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_025662_020 0.2589390745 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_003797_030 0.2589391486 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_005379_010 0.2589394815 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_033066_030 Hb_033066_030 Hb_002060_040 Hb_002060_040 Hb_033066_030--Hb_002060_040 Hb_031866_030 Hb_031866_030 Hb_033066_030--Hb_031866_030 Hb_009152_030 Hb_009152_030 Hb_033066_030--Hb_009152_030 Hb_000009_010 Hb_000009_010 Hb_033066_030--Hb_000009_010 Hb_001629_040 Hb_001629_040 Hb_033066_030--Hb_001629_040 Hb_000789_140 Hb_000789_140 Hb_033066_030--Hb_000789_140 Hb_002060_040--Hb_031866_030 Hb_002060_040--Hb_009152_030 Hb_002060_040--Hb_000009_010 Hb_002060_040--Hb_001629_040 Hb_002060_040--Hb_000789_140 Hb_031866_030--Hb_009152_030 Hb_031866_030--Hb_000009_010 Hb_031866_030--Hb_001629_040 Hb_031866_030--Hb_000789_140 Hb_009152_030--Hb_000009_010 Hb_009152_030--Hb_000789_140 Hb_009152_030--Hb_001629_040 Hb_000009_010--Hb_001629_040 Hb_128193_010 Hb_128193_010 Hb_000009_010--Hb_128193_010 Hb_001629_040--Hb_128193_010 Hb_000155_240 Hb_000155_240 Hb_000789_140--Hb_000155_240 Hb_038508_010 Hb_038508_010 Hb_000789_140--Hb_038508_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00487806 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00344485 0.0186319

CAGE analysis