Hb_033080_010

Information

Type -
Description -
Location Contig33080: 1977-4049
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033080_010 0.0 - - -
2 Hb_005333_040 0.0811132501 - - PREDICTED: dnaJ homolog subfamily C member 5 [Prunus mume]
3 Hb_006501_150 0.0920753801 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000329_690 0.0947908365 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
5 Hb_000345_560 0.0959540341 - - -
6 Hb_006261_040 0.1020196328 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
7 Hb_007992_030 0.1132787942 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
8 Hb_001437_300 0.115036488 - - -
9 Hb_143766_090 0.1181231983 - - 60S ribosomal protein L31B [Hevea brasiliensis]
10 Hb_005529_010 0.1194882485 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000183_070 0.1199557355 - - -
12 Hb_004813_010 0.1210562311 - - nucleic acid binding protein, putative [Ricinus communis]
13 Hb_004502_030 0.1224154007 - - unknown [Populus trichocarpa]
14 Hb_052135_030 0.1236263019 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
15 Hb_004970_200 0.1236407965 - - serine/threonine-protein kinase, putative [Ricinus communis]
16 Hb_004295_020 0.1260689472 - - thioredoxin II-type 1 [Hevea brasiliensis]
17 Hb_005843_110 0.1267889417 - - Caltractin, putative [Ricinus communis]
18 Hb_000270_840 0.1273132601 - - PREDICTED: probable 26S proteasome complex subunit sem1-2 [Nicotiana tomentosiformis]
19 Hb_012675_090 0.1275931693 - - PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1 [Citrus sinensis]
20 Hb_001514_020 0.1309236588 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_033080_010 Hb_033080_010 Hb_005333_040 Hb_005333_040 Hb_033080_010--Hb_005333_040 Hb_006501_150 Hb_006501_150 Hb_033080_010--Hb_006501_150 Hb_000329_690 Hb_000329_690 Hb_033080_010--Hb_000329_690 Hb_000345_560 Hb_000345_560 Hb_033080_010--Hb_000345_560 Hb_006261_040 Hb_006261_040 Hb_033080_010--Hb_006261_040 Hb_007992_030 Hb_007992_030 Hb_033080_010--Hb_007992_030 Hb_005333_040--Hb_006501_150 Hb_000270_840 Hb_000270_840 Hb_005333_040--Hb_000270_840 Hb_000538_020 Hb_000538_020 Hb_005333_040--Hb_000538_020 Hb_005333_040--Hb_000329_690 Hb_004970_200 Hb_004970_200 Hb_005333_040--Hb_004970_200 Hb_143766_090 Hb_143766_090 Hb_006501_150--Hb_143766_090 Hb_001514_020 Hb_001514_020 Hb_006501_150--Hb_001514_020 Hb_004502_030 Hb_004502_030 Hb_006501_150--Hb_004502_030 Hb_000183_070 Hb_000183_070 Hb_006501_150--Hb_000183_070 Hb_168918_020 Hb_168918_020 Hb_000329_690--Hb_168918_020 Hb_000107_390 Hb_000107_390 Hb_000329_690--Hb_000107_390 Hb_004884_220 Hb_004884_220 Hb_000329_690--Hb_004884_220 Hb_000329_690--Hb_000345_560 Hb_001754_150 Hb_001754_150 Hb_000329_690--Hb_001754_150 Hb_000345_560--Hb_007992_030 Hb_000345_560--Hb_004502_030 Hb_000847_070 Hb_000847_070 Hb_000345_560--Hb_000847_070 Hb_002997_170 Hb_002997_170 Hb_000345_560--Hb_002997_170 Hb_003055_050 Hb_003055_050 Hb_000345_560--Hb_003055_050 Hb_000345_560--Hb_168918_020 Hb_017098_030 Hb_017098_030 Hb_006261_040--Hb_017098_030 Hb_006261_040--Hb_000345_560 Hb_012675_090 Hb_012675_090 Hb_006261_040--Hb_012675_090 Hb_006261_040--Hb_004502_030 Hb_001437_300 Hb_001437_300 Hb_006261_040--Hb_001437_300 Hb_007992_030--Hb_004502_030 Hb_007992_030--Hb_000847_070 Hb_007992_030--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_007992_030--Hb_001493_100 Hb_004813_010 Hb_004813_010 Hb_007992_030--Hb_004813_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.83953 0.0935536 0.186962 0.0458549 1.11312 0.625221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.549916 0.816829 0.349952 0.0582012 0.097144

CAGE analysis