Hb_033095_050

Information

Type -
Description -
Location Contig33095: 21831-22313
Sequence    

Annotation

kegg
ID vvi:104879515
description uncharacterized LOC104879515
nr
ID CAN63639.1
description hypothetical protein VITISV_038692 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BM79
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038692 PE=4 SV=1
Gene Ontology
ID GO:0016301
description hypothetical protein VITISV_038692

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033095_050 0.0 - - hypothetical protein VITISV_038692 [Vitis vinifera]
2 Hb_005542_170 0.0887934757 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_002800_020 0.0961587295 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_025528_010 0.1003858154 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
5 Hb_005031_010 0.1070136613 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
6 Hb_101624_010 0.1070407277 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_002249_200 0.1081100703 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
8 Hb_028527_010 0.1491475601 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
9 Hb_001596_010 0.1628086228 - - hypothetical protein POPTR_0001s181102g, partial [Populus trichocarpa]
10 Hb_001244_030 0.1660546816 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_000148_010 0.1990973823 - - -
12 Hb_007083_040 0.2041714391 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
13 Hb_000668_210 0.22211836 - - hypothetical protein PHAVU_006G031500g [Phaseolus vulgaris]
14 Hb_002400_430 0.2314162736 - - -
15 Hb_000965_010 0.2582731053 - - hypothetical protein VITISV_016917 [Vitis vinifera]
16 Hb_104721_010 0.2728877042 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
17 Hb_000922_210 0.2743310262 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
18 Hb_002217_290 0.275842351 - - hypothetical protein JCGZ_19038 [Jatropha curcas]
19 Hb_002200_100 0.2762284372 - - PREDICTED: pathogen-related protein-like [Jatropha curcas]
20 Hb_000495_060 0.278497856 - - Osmotin precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_033095_050 Hb_033095_050 Hb_005542_170 Hb_005542_170 Hb_033095_050--Hb_005542_170 Hb_002800_020 Hb_002800_020 Hb_033095_050--Hb_002800_020 Hb_025528_010 Hb_025528_010 Hb_033095_050--Hb_025528_010 Hb_005031_010 Hb_005031_010 Hb_033095_050--Hb_005031_010 Hb_101624_010 Hb_101624_010 Hb_033095_050--Hb_101624_010 Hb_002249_200 Hb_002249_200 Hb_033095_050--Hb_002249_200 Hb_005542_170--Hb_025528_010 Hb_005542_170--Hb_002249_200 Hb_005542_170--Hb_005031_010 Hb_005542_170--Hb_101624_010 Hb_001244_030 Hb_001244_030 Hb_005542_170--Hb_001244_030 Hb_001596_010 Hb_001596_010 Hb_002800_020--Hb_001596_010 Hb_002800_020--Hb_005031_010 Hb_002800_020--Hb_101624_010 Hb_002800_020--Hb_005542_170 Hb_002800_020--Hb_025528_010 Hb_025528_010--Hb_002249_200 Hb_025528_010--Hb_001244_030 Hb_028527_010 Hb_028527_010 Hb_025528_010--Hb_028527_010 Hb_025528_010--Hb_005031_010 Hb_005031_010--Hb_101624_010 Hb_002400_430 Hb_002400_430 Hb_005031_010--Hb_002400_430 Hb_005031_010--Hb_002249_200 Hb_101624_010--Hb_025528_010 Hb_101624_010--Hb_002400_430 Hb_101624_010--Hb_002249_200 Hb_002249_200--Hb_001244_030 Hb_002249_200--Hb_028527_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.111664 0 0.0931567 0.414193

CAGE analysis