Hb_033149_010

Information

Type -
Description -
Location Contig33149: 4403-5030
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_012066789.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LDA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00277 PE=4 SV=1
Gene Ontology
ID GO:0016787
description disease resistance protein rga3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033149_010 0.0 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_019953_010 0.057592479 - - hypothetical protein CICLE_v10019877mg [Citrus clementina]
3 Hb_003793_010 0.058330924 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
4 Hb_103225_040 0.0587984529 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
5 Hb_000445_410 0.0615044191 - - hypothetical protein EUGRSUZ_F02776 [Eucalyptus grandis]
6 Hb_000007_190 0.0630886377 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 10-like [Jatropha curcas]
7 Hb_152868_020 0.0786448431 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
8 Hb_064445_040 0.0790195621 - - hypothetical protein POPTR_0005s09430g [Populus trichocarpa]
9 Hb_000392_500 0.0797281026 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000037_150 0.0812995761 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
11 Hb_004846_110 0.0816473464 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
12 Hb_006634_120 0.0878724062 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
13 Hb_000422_090 0.0939852579 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006651_020 0.0940823204 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
15 Hb_001373_170 0.0946290983 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
16 Hb_010288_010 0.0946420002 - - Beta-glucosidase, putative [Ricinus communis]
17 Hb_002636_170 0.0952985458 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
18 Hb_000086_460 0.0977924786 - - PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Jatropha curcas]
19 Hb_004030_040 0.0984208112 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
20 Hb_008008_040 0.0987871594 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]

Gene co-expression network

sample Hb_033149_010 Hb_033149_010 Hb_019953_010 Hb_019953_010 Hb_033149_010--Hb_019953_010 Hb_003793_010 Hb_003793_010 Hb_033149_010--Hb_003793_010 Hb_103225_040 Hb_103225_040 Hb_033149_010--Hb_103225_040 Hb_000445_410 Hb_000445_410 Hb_033149_010--Hb_000445_410 Hb_000007_190 Hb_000007_190 Hb_033149_010--Hb_000007_190 Hb_152868_020 Hb_152868_020 Hb_033149_010--Hb_152868_020 Hb_002636_170 Hb_002636_170 Hb_019953_010--Hb_002636_170 Hb_000594_010 Hb_000594_010 Hb_019953_010--Hb_000594_010 Hb_000696_130 Hb_000696_130 Hb_019953_010--Hb_000696_130 Hb_006634_120 Hb_006634_120 Hb_019953_010--Hb_006634_120 Hb_000422_090 Hb_000422_090 Hb_019953_010--Hb_000422_090 Hb_003793_010--Hb_000445_410 Hb_003793_010--Hb_103225_040 Hb_003793_010--Hb_152868_020 Hb_008008_040 Hb_008008_040 Hb_003793_010--Hb_008008_040 Hb_003793_010--Hb_000007_190 Hb_103225_040--Hb_152868_020 Hb_103225_040--Hb_000445_410 Hb_103225_040--Hb_000007_190 Hb_000392_500 Hb_000392_500 Hb_103225_040--Hb_000392_500 Hb_000445_410--Hb_152868_020 Hb_000445_410--Hb_008008_040 Hb_001373_170 Hb_001373_170 Hb_000445_410--Hb_001373_170 Hb_000007_190--Hb_000392_500 Hb_000007_190--Hb_152868_020 Hb_064445_040 Hb_064445_040 Hb_000007_190--Hb_064445_040 Hb_010288_010 Hb_010288_010 Hb_000007_190--Hb_010288_010 Hb_142204_010 Hb_142204_010 Hb_152868_020--Hb_142204_010 Hb_152868_020--Hb_000392_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.067738 1.21698 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.470074

CAGE analysis